miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 28370 0.73 0.469243
Target:  5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3'
miRNA:   3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 27492 0.67 0.803441
Target:  5'- cCGCUGACccUGACCUGggGcACGCCUc -3'
miRNA:   3'- -GUGACUGccGUUGGACuuCcUGUGGG- -5'
18380 3' -54 NC_004681.1 + 24851 0.67 0.793931
Target:  5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5'
18380 3' -54 NC_004681.1 + 24349 0.71 0.563218
Target:  5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3'
miRNA:   3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 24105 0.72 0.499433
Target:  5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3'
miRNA:   3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 22413 0.67 0.825536
Target:  5'- cCGCgGACGGCAACCcuccgcacuACACCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGacuucc---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 22106 0.68 0.737947
Target:  5'- gCACUccggugagGAUGGCGACgaGGucggcgacggucauGGACACCCa -3'
miRNA:   3'- -GUGA--------CUGCCGUUGgaCUu-------------CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 21100 0.66 0.856511
Target:  5'- aGC-GACGGCAAUCcGcuGGACACgCu -3'
miRNA:   3'- gUGaCUGCCGUUGGaCuuCCUGUGgG- -5'
18380 3' -54 NC_004681.1 + 19633 0.67 0.821929
Target:  5'- gGCgaggGugGGCaAGCCUGGgacggcAGcGGCAUCCg -3'
miRNA:   3'- gUGa---CugCCG-UUGGACU------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 19439 0.68 0.757401
Target:  5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3'
miRNA:   3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 19073 0.67 0.784257
Target:  5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3'
miRNA:   3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 18391 0.66 0.848187
Target:  5'- ---aGGCGGCGGCCgcGgcGGcaaacgccuucGCACCCg -3'
miRNA:   3'- gugaCUGCCGUUGGa-CuuCC-----------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 18186 0.66 0.864606
Target:  5'- -cCUGGCGGU--CCUGGAGcGccucccggcGCACCCc -3'
miRNA:   3'- guGACUGCCGuuGGACUUC-C---------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 17342 0.68 0.76446
Target:  5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3'
miRNA:   3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5'
18380 3' -54 NC_004681.1 + 17303 0.67 0.803441
Target:  5'- uGCUGGCGcGCGuGCCcGcGGGACGCUa -3'
miRNA:   3'- gUGACUGC-CGU-UGGaCuUCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 17270 0.69 0.723369
Target:  5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3'
miRNA:   3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 17183 0.67 0.803441
Target:  5'- cCGC-GGCgcaGGCGGCCgUGGcgcAGGACACCUu -3'
miRNA:   3'- -GUGaCUG---CCGUUGG-ACU---UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 16787 0.68 0.77443
Target:  5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3'
miRNA:   3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 16156 0.67 0.792971
Target:  5'- gGCgUGGCGGCGcuGCCauguuggcUGGAagcccaccgcuucGGACGCCCg -3'
miRNA:   3'- gUG-ACUGCCGU--UGG--------ACUU-------------CCUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.