miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 15872 0.72 0.540954
Target:  5'- gACUGugGGgAGCCUGGcggccgcguGGGuCACCg -3'
miRNA:   3'- gUGACugCCgUUGGACU---------UCCuGUGGg -5'
18380 3' -54 NC_004681.1 + 15192 0.67 0.812777
Target:  5'- gCGCUGuCcaaGCAG-CUGAAGGAC-CCCa -3'
miRNA:   3'- -GUGACuGc--CGUUgGACUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 14777 0.7 0.659307
Target:  5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3'
miRNA:   3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 13431 0.67 0.830888
Target:  5'- aGCUGuucgaugagaACGGCgAGCCgaUGAAGGAC-CUCg -3'
miRNA:   3'- gUGAC----------UGCCG-UUGG--ACUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 12650 0.77 0.268199
Target:  5'- gGCUGACGGCGug--GAugGGGGCACCCc -3'
miRNA:   3'- gUGACUGCCGUuggaCU--UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 11727 1.12 0.001337
Target:  5'- cCACUGACGGCAACCUGAAGGACACCCu -3'
miRNA:   3'- -GUGACUGCCGUUGGACUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 11682 0.68 0.77443
Target:  5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3'
miRNA:   3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5'
18380 3' -54 NC_004681.1 + 10714 0.67 0.830888
Target:  5'- gUugUGGCGGCcguaCUucAGGGCGCCUu -3'
miRNA:   3'- -GugACUGCCGuug-GAcuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 9219 0.66 0.851543
Target:  5'- aCGCUGugGugaugaacccgcGCGacugggagcuccugcGCCUGAcgaAGGACGCCa -3'
miRNA:   3'- -GUGACugC------------CGU---------------UGGACU---UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 8486 0.71 0.572836
Target:  5'- gGCUG-CGGCuGAgCUGAuGGGCGCCUu -3'
miRNA:   3'- gUGACuGCCG-UUgGACUuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 7057 0.66 0.839643
Target:  5'- aACgaccGCGGC-GCCaUGAAGGacgGCACCCc -3'
miRNA:   3'- gUGac--UGCCGuUGG-ACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 6919 0.68 0.76446
Target:  5'- uCGgUGGCGGCGGCCgUGAcgauGGucaGCGCCUc -3'
miRNA:   3'- -GUgACUGCCGUUGG-ACUu---CC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 6828 0.68 0.76446
Target:  5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3'
miRNA:   3'- gugACUGCCGU---UGGACUUccUGUGGg -5'
18380 3' -54 NC_004681.1 + 6637 0.82 0.150223
Target:  5'- aACUGGCGGagaaguaccccgaCGACCUGGAGGACAUCUu -3'
miRNA:   3'- gUGACUGCC-------------GUUGGACUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 5249 0.7 0.615965
Target:  5'- cCGCUGugGGCAugCaGuuGGAgCGCCa -3'
miRNA:   3'- -GUGACugCCGUugGaCuuCCU-GUGGg -5'
18380 3' -54 NC_004681.1 + 368 0.67 0.784257
Target:  5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3'
miRNA:   3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.