miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 69019 0.68 0.76446
Target:  5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3'
miRNA:   3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5'
18380 3' -54 NC_004681.1 + 17342 0.68 0.76446
Target:  5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3'
miRNA:   3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5'
18380 3' -54 NC_004681.1 + 15872 0.72 0.540954
Target:  5'- gACUGugGGgAGCCUGGcggccgcguGGGuCACCg -3'
miRNA:   3'- gUGACugCCgUUGGACU---------UCCuGUGGg -5'
18380 3' -54 NC_004681.1 + 55811 0.72 0.530455
Target:  5'- uGCUGACGGUcgauGACCUcAAGG-CGCUCg -3'
miRNA:   3'- gUGACUGCCG----UUGGAcUUCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 52757 0.72 0.520031
Target:  5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3'
miRNA:   3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5'
18380 3' -54 NC_004681.1 + 24105 0.72 0.499433
Target:  5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3'
miRNA:   3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 48664 0.75 0.376087
Target:  5'- aCGCUGGCGGgAAcCCUGgcGGGCcagcuCCCa -3'
miRNA:   3'- -GUGACUGCCgUU-GGACuuCCUGu----GGG- -5'
18380 3' -54 NC_004681.1 + 12650 0.77 0.268199
Target:  5'- gGCUGACGGCGug--GAugGGGGCACCCc -3'
miRNA:   3'- gUGACUGCCGUuggaCU--UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 38836 0.78 0.261533
Target:  5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3'
miRNA:   3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5'
18380 3' -54 NC_004681.1 + 6637 0.82 0.150223
Target:  5'- aACUGGCGGagaaguaccccgaCGACCUGGAGGACAUCUu -3'
miRNA:   3'- gUGACUGCC-------------GUUGGACUUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 8486 0.71 0.572836
Target:  5'- gGCUG-CGGCuGAgCUGAuGGGCGCCUu -3'
miRNA:   3'- gUGACuGCCG-UUgGACUuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 5249 0.7 0.615965
Target:  5'- cCGCUGugGGCAugCaGuuGGAgCGCCa -3'
miRNA:   3'- -GUGACugCCGUugGaCuuCCU-GUGGg -5'
18380 3' -54 NC_004681.1 + 32652 0.68 0.758413
Target:  5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3'
miRNA:   3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 19439 0.68 0.757401
Target:  5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3'
miRNA:   3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 17270 0.69 0.723369
Target:  5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3'
miRNA:   3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 48759 0.69 0.712849
Target:  5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3'
miRNA:   3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 14777 0.7 0.659307
Target:  5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3'
miRNA:   3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 60608 0.7 0.658225
Target:  5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3'
miRNA:   3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.