miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 39355 0.68 0.76446
Target:  5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3'
miRNA:   3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5'
18380 3' -54 NC_004681.1 + 6828 0.68 0.76446
Target:  5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3'
miRNA:   3'- gugACUGCCGU---UGGACUUccUGUGGg -5'
18380 3' -54 NC_004681.1 + 69019 0.68 0.76446
Target:  5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3'
miRNA:   3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5'
18380 3' -54 NC_004681.1 + 17342 0.68 0.76446
Target:  5'- aGC--GCGGCGACCUGAcucaAGGucuCGCCg -3'
miRNA:   3'- gUGacUGCCGUUGGACU----UCCu--GUGGg -5'
18380 3' -54 NC_004681.1 + 32652 0.68 0.758413
Target:  5'- aCGgUGGCGGgGACCUGGgccgacaugugguccGGG-UACCCc -3'
miRNA:   3'- -GUgACUGCCgUUGGACU---------------UCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 19439 0.68 0.757401
Target:  5'- gCACcGAUGGCAccguaaugcguugguACCcggGAaguuccaAGGGCACCCg -3'
miRNA:   3'- -GUGaCUGCCGU---------------UGGa--CU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 17270 0.69 0.723369
Target:  5'- aCGCgGGCGGCGGguauCCcGGAGacGACGCCCu -3'
miRNA:   3'- -GUGaCUGCCGUU----GGaCUUC--CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 48759 0.69 0.712849
Target:  5'- gCACcuccagGACGGCGgcuacACCUGGAGuGAgGCCg -3'
miRNA:   3'- -GUGa-----CUGCCGU-----UGGACUUC-CUgUGGg -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 55163 0.7 0.626803
Target:  5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3'
miRNA:   3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 41734 0.7 0.626803
Target:  5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3'
miRNA:   3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5'
18380 3' -54 NC_004681.1 + 24349 0.71 0.563218
Target:  5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3'
miRNA:   3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 35781 0.72 0.518993
Target:  5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3'
miRNA:   3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5'
18380 3' -54 NC_004681.1 + 28370 0.73 0.469243
Target:  5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3'
miRNA:   3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 75244 0.74 0.440014
Target:  5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3'
miRNA:   3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5'
18380 3' -54 NC_004681.1 + 61526 0.76 0.326508
Target:  5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3'
miRNA:   3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5'
18380 3' -54 NC_004681.1 + 66840 0.78 0.24234
Target:  5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3'
miRNA:   3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 32168 0.66 0.864606
Target:  5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3'
miRNA:   3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.