miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 61896 0.82 0.146594
Target:  5'- cCACUGAUGGCGGCCUGAucGGCACg- -3'
miRNA:   3'- -GUGACUGCCGUUGGACUucCUGUGgg -5'
18380 3' -54 NC_004681.1 + 17183 0.67 0.803441
Target:  5'- cCGC-GGCgcaGGCGGCCgUGGcgcAGGACACCUu -3'
miRNA:   3'- -GUGaCUG---CCGUUGG-ACU---UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 10714 0.67 0.830888
Target:  5'- gUugUGGCGGCcguaCUucAGGGCGCCUu -3'
miRNA:   3'- -GugACUGCCGuug-GAcuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 32168 0.66 0.864606
Target:  5'- -gUUGAuCGGCGGgCUGAAGGGCgagguacgaaGCCa -3'
miRNA:   3'- guGACU-GCCGUUgGACUUCCUG----------UGGg -5'
18380 3' -54 NC_004681.1 + 28370 0.73 0.469243
Target:  5'- uCGCacGCGGCGACCUGAuGG-CACUCg -3'
miRNA:   3'- -GUGacUGCCGUUGGACUuCCuGUGGG- -5'
18380 3' -54 NC_004681.1 + 35781 0.72 0.518993
Target:  5'- uGCUGGCGuCGGCCUGcGGGAucggcuuCGCCCu -3'
miRNA:   3'- gUGACUGCcGUUGGACuUCCU-------GUGGG- -5'
18380 3' -54 NC_004681.1 + 41734 0.7 0.626803
Target:  5'- uGCUGGauaGGCAGgaauuaCUGGAGGGCGgCCa -3'
miRNA:   3'- gUGACUg--CCGUUg-----GACUUCCUGUgGG- -5'
18380 3' -54 NC_004681.1 + 55163 0.7 0.626803
Target:  5'- gCAUUGcgugggaacuccGCGGUGACCUcGAuguaguccgAGGACACCCc -3'
miRNA:   3'- -GUGAC------------UGCCGUUGGA-CU---------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 63094 0.68 0.748238
Target:  5'- uCGCUGGCGGUAugggugugguccucaGCCgucucAGuGGCACCCu -3'
miRNA:   3'- -GUGACUGCCGU---------------UGGacu--UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 16156 0.67 0.792971
Target:  5'- gGCgUGGCGGCGcuGCCauguuggcUGGAagcccaccgcuucGGACGCCCg -3'
miRNA:   3'- gUG-ACUGCCGU--UGG--------ACUU-------------CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 6919 0.68 0.76446
Target:  5'- uCGgUGGCGGCGGCCgUGAcgauGGucaGCGCCUc -3'
miRNA:   3'- -GUgACUGCCGUUGG-ACUu---CC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 56916 0.68 0.744135
Target:  5'- cCGC-GACGGgAGCCUG-GGGACcgGCCa -3'
miRNA:   3'- -GUGaCUGCCgUUGGACuUCCUG--UGGg -5'
18380 3' -54 NC_004681.1 + 66840 0.78 0.24234
Target:  5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3'
miRNA:   3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 39019 0.68 0.774429
Target:  5'- cCACggcccGCGGCGACaaaGAGGACugCCu -3'
miRNA:   3'- -GUGac---UGCCGUUGgacUUCCUGugGG- -5'
18380 3' -54 NC_004681.1 + 61526 0.76 0.326508
Target:  5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3'
miRNA:   3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5'
18380 3' -54 NC_004681.1 + 22106 0.68 0.737947
Target:  5'- gCACUccggugagGAUGGCGACgaGGucggcgacggucauGGACACCCa -3'
miRNA:   3'- -GUGA--------CUGCCGUUGgaCUu-------------CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 34047 0.67 0.782304
Target:  5'- cCACUG-CGGCGcgaaggccgucgaACCUGGAGGcguGCAggagguuCCCg -3'
miRNA:   3'- -GUGACuGCCGU-------------UGGACUUCC---UGU-------GGG- -5'
18380 3' -54 NC_004681.1 + 35935 0.67 0.803441
Target:  5'- gGCUGGCcGC-GCgCUGggGGucucCGCCCg -3'
miRNA:   3'- gUGACUGcCGuUG-GACuuCCu---GUGGG- -5'
18380 3' -54 NC_004681.1 + 75244 0.74 0.440014
Target:  5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3'
miRNA:   3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5'
18380 3' -54 NC_004681.1 + 24349 0.71 0.563218
Target:  5'- aGCUGGCGGCAGCggucgcccaguucgaUGAGGcGACGCUg -3'
miRNA:   3'- gUGACUGCCGUUGg--------------ACUUC-CUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.