miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 75244 0.74 0.440014
Target:  5'- gGCgucGAUGGCGcCCUGAAGGAacuCGCCUg -3'
miRNA:   3'- gUGa--CUGCCGUuGGACUUCCU---GUGGG- -5'
18380 3' -54 NC_004681.1 + 57716 0.66 0.856511
Target:  5'- -cCUGACccGguGCCUGGccgGGGGCGCCg -3'
miRNA:   3'- guGACUGc-CguUGGACU---UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 17183 0.67 0.803441
Target:  5'- cCGC-GGCgcaGGCGGCCgUGGcgcAGGACACCUu -3'
miRNA:   3'- -GUGaCUG---CCGUUGG-ACU---UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 61526 0.76 0.326508
Target:  5'- cCGCgccuCGGCGACCUGAAGcuCACCCu -3'
miRNA:   3'- -GUGacu-GCCGUUGGACUUCcuGUGGG- -5'
18380 3' -54 NC_004681.1 + 66840 0.78 0.24234
Target:  5'- uGCUGACGGUGGCC-GAGGuGGCGCCg -3'
miRNA:   3'- gUGACUGCCGUUGGaCUUC-CUGUGGg -5'
18380 3' -54 NC_004681.1 + 61896 0.82 0.146594
Target:  5'- cCACUGAUGGCGGCCUGAucGGCACg- -3'
miRNA:   3'- -GUGACUGCCGUUGGACUucCUGUGgg -5'
18380 3' -54 NC_004681.1 + 52757 0.72 0.520031
Target:  5'- gCGCUGcAUGGuCGACCUGgcGGACAgCa -3'
miRNA:   3'- -GUGAC-UGCC-GUUGGACuuCCUGUgGg -5'
18380 3' -54 NC_004681.1 + 38836 0.78 0.261533
Target:  5'- ---cGGCGGCAGCgUGGAGGGCuACCUg -3'
miRNA:   3'- gugaCUGCCGUUGgACUUCCUG-UGGG- -5'
18380 3' -54 NC_004681.1 + 24851 0.67 0.793931
Target:  5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5'
18380 3' -54 NC_004681.1 + 368 0.67 0.784257
Target:  5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3'
miRNA:   3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 14777 0.7 0.659307
Target:  5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3'
miRNA:   3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 60608 0.7 0.658225
Target:  5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3'
miRNA:   3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 24105 0.72 0.499433
Target:  5'- ---cGGCGcCAGCCUGgcGGACGCCUu -3'
miRNA:   3'- gugaCUGCcGUUGGACuuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 11682 0.68 0.77443
Target:  5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3'
miRNA:   3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5'
18380 3' -54 NC_004681.1 + 16787 0.68 0.77443
Target:  5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3'
miRNA:   3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 62014 0.68 0.77443
Target:  5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3'
miRNA:   3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 19073 0.67 0.784257
Target:  5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3'
miRNA:   3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.