miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18380 3' -54 NC_004681.1 + 18391 0.66 0.848187
Target:  5'- ---aGGCGGCGGCCgcGgcGGcaaacgccuucGCACCCg -3'
miRNA:   3'- gugaCUGCCGUUGGa-CuuCC-----------UGUGGG- -5'
18380 3' -54 NC_004681.1 + 66636 0.66 0.847342
Target:  5'- uCGCUcugGACGGCGcUCUGGgcaucggGGGGUACCCg -3'
miRNA:   3'- -GUGA---CUGCCGUuGGACU-------UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 368 0.67 0.784257
Target:  5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3'
miRNA:   3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5'
18380 3' -54 NC_004681.1 + 19073 0.67 0.784257
Target:  5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3'
miRNA:   3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 62014 0.68 0.77443
Target:  5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3'
miRNA:   3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 16787 0.68 0.77443
Target:  5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3'
miRNA:   3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5'
18380 3' -54 NC_004681.1 + 11682 0.68 0.77443
Target:  5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3'
miRNA:   3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5'
18380 3' -54 NC_004681.1 + 39355 0.68 0.76446
Target:  5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3'
miRNA:   3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5'
18380 3' -54 NC_004681.1 + 6828 0.68 0.76446
Target:  5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3'
miRNA:   3'- gugACUGCCGU---UGGACUUccUGUGGg -5'
18380 3' -54 NC_004681.1 + 69019 0.68 0.76446
Target:  5'- uCAC-GACGaguGCGACCUGAcaccGGGccGCACCUg -3'
miRNA:   3'- -GUGaCUGC---CGUUGGACU----UCC--UGUGGG- -5'
18380 3' -54 NC_004681.1 + 24851 0.67 0.793931
Target:  5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3'
miRNA:   3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5'
18380 3' -54 NC_004681.1 + 23855 0.69 0.702252
Target:  5'- aGCUGGaucaGCGGCCUGAcGGACACg- -3'
miRNA:   3'- gUGACUgc--CGUUGGACUuCCUGUGgg -5'
18380 3' -54 NC_004681.1 + 7057 0.66 0.839643
Target:  5'- aACgaccGCGGC-GCCaUGAAGGacgGCACCCc -3'
miRNA:   3'- gUGac--UGCCGuUGG-ACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 50295 0.67 0.830888
Target:  5'- cCACguccccGCGGcCGACgCUGAAcucauGGGCACCCc -3'
miRNA:   3'- -GUGac----UGCC-GUUG-GACUU-----CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 49075 0.68 0.76446
Target:  5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3'
miRNA:   3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 8486 0.71 0.572836
Target:  5'- gGCUG-CGGCuGAgCUGAuGGGCGCCUu -3'
miRNA:   3'- gUGACuGCCG-UUgGACUuCCUGUGGG- -5'
18380 3' -54 NC_004681.1 + 5249 0.7 0.615965
Target:  5'- cCGCUGugGGCAugCaGuuGGAgCGCCa -3'
miRNA:   3'- -GUGACugCCGUugGaCuuCCU-GUGGg -5'
18380 3' -54 NC_004681.1 + 60608 0.7 0.658225
Target:  5'- cCGCUG-CGGC-ACUUGAcgagcagAGcGGCACCCu -3'
miRNA:   3'- -GUGACuGCCGuUGGACU-------UC-CUGUGGG- -5'
18380 3' -54 NC_004681.1 + 14777 0.7 0.659307
Target:  5'- cCGCgGACgcccuGGCcauCCUGAAGGcugGCGCCCa -3'
miRNA:   3'- -GUGaCUG-----CCGuu-GGACUUCC---UGUGGG- -5'
18380 3' -54 NC_004681.1 + 6944 0.7 0.670106
Target:  5'- -uUUGAgGGCGACaagCUGAugauGGACGCCUa -3'
miRNA:   3'- guGACUgCCGUUG---GACUu---CCUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.