Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18380 | 3' | -54 | NC_004681.1 | + | 22413 | 0.67 | 0.825536 |
Target: 5'- cCGCgGACGGCAACCcuccgcacuACACCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGacuucc---UGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19633 | 0.67 | 0.821929 |
Target: 5'- gGCgaggGugGGCaAGCCUGGgacggcAGcGGCAUCCg -3' miRNA: 3'- gUGa---CugCCG-UUGGACU------UC-CUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 67212 | 0.67 | 0.812777 |
Target: 5'- gGCUGuCGGCAACC------GCACCCg -3' miRNA: 3'- gUGACuGCCGUUGGacuuccUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 15192 | 0.67 | 0.812777 |
Target: 5'- gCGCUGuCcaaGCAG-CUGAAGGAC-CCCa -3' miRNA: 3'- -GUGACuGc--CGUUgGACUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 59853 | 0.67 | 0.803441 |
Target: 5'- cCACcu-CGGCGACUgccGGGACAUCCu -3' miRNA: 3'- -GUGacuGCCGUUGGacuUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 27492 | 0.67 | 0.803441 |
Target: 5'- cCGCUGACccUGACCUGggGcACGCCUc -3' miRNA: 3'- -GUGACUGccGUUGGACuuCcUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 17303 | 0.67 | 0.803441 |
Target: 5'- uGCUGGCGcGCGuGCCcGcGGGACGCUa -3' miRNA: 3'- gUGACUGC-CGU-UGGaCuUCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 24851 | 0.67 | 0.793931 |
Target: 5'- gCGCgGGCGGCGGCCgccAAGG-CuCCCu -3' miRNA: 3'- -GUGaCUGCCGUUGGac-UUCCuGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 368 | 0.67 | 0.784257 |
Target: 5'- cCGCgagGACGaGCccgcggucaaGACCUGGggcaAGGGCACCg -3' miRNA: 3'- -GUGa--CUGC-CG----------UUGGACU----UCCUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 19073 | 0.67 | 0.784257 |
Target: 5'- uCACUGucgaGGCAuccggcgucACCacccAGGACACCCg -3' miRNA: 3'- -GUGACug--CCGU---------UGGacu-UCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 62014 | 0.68 | 0.77443 |
Target: 5'- cUACUcGAC-GCGGCCgu-GGGACACCUc -3' miRNA: 3'- -GUGA-CUGcCGUUGGacuUCCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 16787 | 0.68 | 0.77443 |
Target: 5'- -cCUGGCGGCAuccccggcauGCCc-GAGGAC-CCCu -3' miRNA: 3'- guGACUGCCGU----------UGGacUUCCUGuGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 11682 | 0.68 | 0.77443 |
Target: 5'- aGCcgGAUGGCuccaccAGCCUGgcGGACuucACCCc -3' miRNA: 3'- gUGa-CUGCCG------UUGGACuuCCUG---UGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 49075 | 0.68 | 0.76446 |
Target: 5'- aGCgaaGACgGGCAcCCUGAcgcGGGCAUCCu -3' miRNA: 3'- gUGa--CUG-CCGUuGGACUu--CCUGUGGG- -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 39355 | 0.68 | 0.76446 |
Target: 5'- cCGCUGugGauCGGCCUGggGGgaagacucuccuACACCg -3' miRNA: 3'- -GUGACugCc-GUUGGACuuCC------------UGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 6828 | 0.68 | 0.76446 |
Target: 5'- --gUGACGGCGacaGCCUGAA--GCGCCa -3' miRNA: 3'- gugACUGCCGU---UGGACUUccUGUGGg -5' |
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18380 | 3' | -54 | NC_004681.1 | + | 11727 | 1.12 | 0.001337 |
Target: 5'- cCACUGACGGCAACCUGAAGGACACCCu -3' miRNA: 3'- -GUGACUGCCGUUGGACUUCCUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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