miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18382 5' -49.2 NC_004681.1 + 9335 0.66 0.987139
Target:  5'- -cCCUUacgucaGAGaGCGGAGGugGUCGGCc -3'
miRNA:   3'- caGGAAg-----UUC-CGCUUCCuuUAGCUGc -5'
18382 5' -49.2 NC_004681.1 + 13403 0.66 0.985344
Target:  5'- uUCCU---GGGCGgcGGAGagggcgguGUCGGCGc -3'
miRNA:   3'- cAGGAaguUCCGCuuCCUU--------UAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 51240 0.66 0.983363
Target:  5'- -gUCUUCGGGuCGAAGGGAAUCuuCGa -3'
miRNA:   3'- caGGAAGUUCcGCUUCCUUUAGcuGC- -5'
18382 5' -49.2 NC_004681.1 + 7724 0.66 0.981186
Target:  5'- aGUCCaccaUCGAGGUGGAGGucccCGAgGg -3'
miRNA:   3'- -CAGGa---AGUUCCGCUUCCuuuaGCUgC- -5'
18382 5' -49.2 NC_004681.1 + 67029 0.66 0.981186
Target:  5'- -aCCUUCAucGGUGAuggucAGGgcGUUGGCGa -3'
miRNA:   3'- caGGAAGUu-CCGCU-----UCCuuUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 61849 0.66 0.978553
Target:  5'- -gCCUUgAguuGGGCGggGGAcuucaucAGUUGACa -3'
miRNA:   3'- caGGAAgU---UCCGCuuCCU-------UUAGCUGc -5'
18382 5' -49.2 NC_004681.1 + 45375 0.67 0.976203
Target:  5'- -aCCUcCAAGGCGggGGAGcaccucAagGGCa -3'
miRNA:   3'- caGGAaGUUCCGCuuCCUU------UagCUGc -5'
18382 5' -49.2 NC_004681.1 + 31067 0.67 0.976203
Target:  5'- gGUCCcaCGAGuugaagccgcccGCGAGGGAGuccUCGACGu -3'
miRNA:   3'- -CAGGaaGUUC------------CGCUUCCUUu--AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 16944 0.67 0.976203
Target:  5'- uGUCCUcgUCAGcgagaagcuGGCG-AGGAGGUgGAUGg -3'
miRNA:   3'- -CAGGA--AGUU---------CCGCuUCCUUUAgCUGC- -5'
18382 5' -49.2 NC_004681.1 + 23889 0.67 0.970315
Target:  5'- gGUCCUUguGGGUGucGAGGuauuccUCGACGc -3'
miRNA:   3'- -CAGGAAguUCCGC--UUCCuuu---AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 36029 0.67 0.96701
Target:  5'- gGUCUUgccccaCGAGGCGuGGGAGG-CGAUGg -3'
miRNA:   3'- -CAGGAa-----GUUCCGCuUCCUUUaGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 6223 0.67 0.963452
Target:  5'- --aCUggGAGGCGAAGuccGAGUCGACGc -3'
miRNA:   3'- cagGAagUUCCGCUUCc--UUUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 67943 0.67 0.963452
Target:  5'- uUCCUcgGAGGCGgcGGcggucucAUCGACGg -3'
miRNA:   3'- cAGGAagUUCCGCuuCCuu-----UAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 11185 0.67 0.963452
Target:  5'- cGUCCggUAuGGCGAucuGGGuguAGUCGAUGa -3'
miRNA:   3'- -CAGGaaGUuCCGCU---UCCu--UUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 18834 0.67 0.961957
Target:  5'- -gCC-UCAugggggcggagcuGGCGAAGGAAuacAUCGACGc -3'
miRNA:   3'- caGGaAGUu------------CCGCUUCCUU---UAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 61299 0.68 0.959635
Target:  5'- cUCCUUCGAGaCcAAGGAGggCGACa -3'
miRNA:   3'- cAGGAAGUUCcGcUUCCUUuaGCUGc -5'
18382 5' -49.2 NC_004681.1 + 41237 0.68 0.955552
Target:  5'- -cCCaUCGAGGUGGAGGAGG-CGuACa -3'
miRNA:   3'- caGGaAGUUCCGCUUCCUUUaGC-UGc -5'
18382 5' -49.2 NC_004681.1 + 62113 0.68 0.955552
Target:  5'- uGUUCUUgAGGGCGAGGucGAccucaaucUCGGCGg -3'
miRNA:   3'- -CAGGAAgUUCCGCUUCcuUU--------AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 68776 0.68 0.951197
Target:  5'- cGUCCUUCAuGGCGccGcggucguucauGAAcgCGACGg -3'
miRNA:   3'- -CAGGAAGUuCCGCuuC-----------CUUuaGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 29733 0.68 0.951197
Target:  5'- uGUCg-UCAAGGCGcuuguuGAGGAGcgCGGCu -3'
miRNA:   3'- -CAGgaAGUUCCGC------UUCCUUuaGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.