Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18382 | 5' | -49.2 | NC_004681.1 | + | 9335 | 0.66 | 0.987139 |
Target: 5'- -cCCUUacgucaGAGaGCGGAGGugGUCGGCc -3' miRNA: 3'- caGGAAg-----UUC-CGCUUCCuuUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 13403 | 0.66 | 0.985344 |
Target: 5'- uUCCU---GGGCGgcGGAGagggcgguGUCGGCGc -3' miRNA: 3'- cAGGAaguUCCGCuuCCUU--------UAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 51240 | 0.66 | 0.983363 |
Target: 5'- -gUCUUCGGGuCGAAGGGAAUCuuCGa -3' miRNA: 3'- caGGAAGUUCcGCUUCCUUUAGcuGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 67029 | 0.66 | 0.981186 |
Target: 5'- -aCCUUCAucGGUGAuggucAGGgcGUUGGCGa -3' miRNA: 3'- caGGAAGUu-CCGCU-----UCCuuUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61849 | 0.66 | 0.978553 |
Target: 5'- -gCCUUgAguuGGGCGggGGAcuucaucAGUUGACa -3' miRNA: 3'- caGGAAgU---UCCGCuuCCU-------UUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 7724 | 0.66 | 0.981186 |
Target: 5'- aGUCCaccaUCGAGGUGGAGGucccCGAgGg -3' miRNA: 3'- -CAGGa---AGUUCCGCUUCCuuuaGCUgC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 11185 | 0.67 | 0.963452 |
Target: 5'- cGUCCggUAuGGCGAucuGGGuguAGUCGAUGa -3' miRNA: 3'- -CAGGaaGUuCCGCU---UCCu--UUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 16944 | 0.67 | 0.976203 |
Target: 5'- uGUCCUcgUCAGcgagaagcuGGCG-AGGAGGUgGAUGg -3' miRNA: 3'- -CAGGA--AGUU---------CCGCuUCCUUUAgCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 31067 | 0.67 | 0.976203 |
Target: 5'- gGUCCcaCGAGuugaagccgcccGCGAGGGAGuccUCGACGu -3' miRNA: 3'- -CAGGaaGUUC------------CGCUUCCUUu--AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 67943 | 0.67 | 0.963452 |
Target: 5'- uUCCUcgGAGGCGgcGGcggucucAUCGACGg -3' miRNA: 3'- cAGGAagUUCCGCuuCCuu-----UAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 45375 | 0.67 | 0.976203 |
Target: 5'- -aCCUcCAAGGCGggGGAGcaccucAagGGCa -3' miRNA: 3'- caGGAaGUUCCGCuuCCUU------UagCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 6223 | 0.67 | 0.963452 |
Target: 5'- --aCUggGAGGCGAAGuccGAGUCGACGc -3' miRNA: 3'- cagGAagUUCCGCUUCc--UUUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 18834 | 0.67 | 0.961957 |
Target: 5'- -gCC-UCAugggggcggagcuGGCGAAGGAAuacAUCGACGc -3' miRNA: 3'- caGGaAGUu------------CCGCUUCCUU---UAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 23889 | 0.67 | 0.970315 |
Target: 5'- gGUCCUUguGGGUGucGAGGuauuccUCGACGc -3' miRNA: 3'- -CAGGAAguUCCGC--UUCCuuu---AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 36029 | 0.67 | 0.96701 |
Target: 5'- gGUCUUgccccaCGAGGCGuGGGAGG-CGAUGg -3' miRNA: 3'- -CAGGAa-----GUUCCGCuUCCUUUaGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 18202 | 0.68 | 0.942158 |
Target: 5'- gGUCCUUUAucgaguagcccagucGGCGGAGGGAcuguaggCGGCGg -3' miRNA: 3'- -CAGGAAGUu--------------CCGCUUCCUUua-----GCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 32216 | 0.68 | 0.941654 |
Target: 5'- cGUCCcUCGGGGCaagGAGGGAAGgacccUCGGgGg -3' miRNA: 3'- -CAGGaAGUUCCG---CUUCCUUU-----AGCUgC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 30472 | 0.68 | 0.941654 |
Target: 5'- -gCCUUgGAGGUGcGGGAGuauggcUCGACGu -3' miRNA: 3'- caGGAAgUUCCGCuUCCUUu-----AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 62113 | 0.68 | 0.955552 |
Target: 5'- uGUUCUUgAGGGCGAGGucGAccucaaucUCGGCGg -3' miRNA: 3'- -CAGGAAgUUCCGCUUCcuUU--------AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 41237 | 0.68 | 0.955552 |
Target: 5'- -cCCaUCGAGGUGGAGGAGG-CGuACa -3' miRNA: 3'- caGGaAGUUCCGCUUCCUUUaGC-UGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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