miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18382 5' -49.2 NC_004681.1 + 590 0.7 0.88464
Target:  5'- uUCCUUCAGGGCGcc----AUCGACGc -3'
miRNA:   3'- cAGGAAGUUCCGCuuccuuUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 631 0.74 0.701888
Target:  5'- uGUCC-UCAAGGCGGAu---GUCGACGg -3'
miRNA:   3'- -CAGGaAGUUCCGCUUccuuUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 1551 0.74 0.701888
Target:  5'- -gCCUUCAGcugggcGGCGggGGAGAggaaGACGg -3'
miRNA:   3'- caGGAAGUU------CCGCuuCCUUUag--CUGC- -5'
18382 5' -49.2 NC_004681.1 + 6223 0.67 0.963452
Target:  5'- --aCUggGAGGCGAAGuccGAGUCGACGc -3'
miRNA:   3'- cagGAagUUCCGCUUCc--UUUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 7724 0.66 0.981186
Target:  5'- aGUCCaccaUCGAGGUGGAGGucccCGAgGg -3'
miRNA:   3'- -CAGGa---AGUUCCGCUUCCuuuaGCUgC- -5'
18382 5' -49.2 NC_004681.1 + 9335 0.66 0.987139
Target:  5'- -cCCUUacgucaGAGaGCGGAGGugGUCGGCc -3'
miRNA:   3'- caGGAAg-----UUC-CGCUUCCuuUAGCUGc -5'
18382 5' -49.2 NC_004681.1 + 11185 0.67 0.963452
Target:  5'- cGUCCggUAuGGCGAucuGGGuguAGUCGAUGa -3'
miRNA:   3'- -CAGGaaGUuCCGCU---UCCu--UUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 12137 1.11 0.004852
Target:  5'- aGUCCUUCAAGGCGAAGGAAAUCGACGg -3'
miRNA:   3'- -CAGGAAGUUCCGCUUCCUUUAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 12487 0.71 0.868924
Target:  5'- -aCCUUCAAGGUGAccgcGGAAGgcagcaaCGGCGa -3'
miRNA:   3'- caGGAAGUUCCGCUu---CCUUUa------GCUGC- -5'
18382 5' -49.2 NC_004681.1 + 13403 0.66 0.985344
Target:  5'- uUCCU---GGGCGgcGGAGagggcgguGUCGGCGc -3'
miRNA:   3'- cAGGAaguUCCGCuuCCUU--------UAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 14169 0.69 0.912816
Target:  5'- cUUCggCAAGGCGGgcaAGGAAGUCGGu- -3'
miRNA:   3'- cAGGaaGUUCCGCU---UCCUUUAGCUgc -5'
18382 5' -49.2 NC_004681.1 + 16944 0.67 0.976203
Target:  5'- uGUCCUcgUCAGcgagaagcuGGCG-AGGAGGUgGAUGg -3'
miRNA:   3'- -CAGGA--AGUU---------CCGCuUCCUUUAgCUGC- -5'
18382 5' -49.2 NC_004681.1 + 18202 0.68 0.942158
Target:  5'- gGUCCUUUAucgaguagcccagucGGCGGAGGGAcuguaggCGGCGg -3'
miRNA:   3'- -CAGGAAGUu--------------CCGCUUCCUUua-----GCUGC- -5'
18382 5' -49.2 NC_004681.1 + 18834 0.67 0.961957
Target:  5'- -gCC-UCAugggggcggagcuGGCGAAGGAAuacAUCGACGc -3'
miRNA:   3'- caGGaAGUu------------CCGCUUCCUU---UAGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 23889 0.67 0.970315
Target:  5'- gGUCCUUguGGGUGucGAGGuauuccUCGACGc -3'
miRNA:   3'- -CAGGAAguUCCGC--UUCCuuu---AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 28094 0.69 0.935924
Target:  5'- -aCCUUCAAcGGCGGcaacaacGGGAccagCGACGg -3'
miRNA:   3'- caGGAAGUU-CCGCU-------UCCUuua-GCUGC- -5'
18382 5' -49.2 NC_004681.1 + 29733 0.68 0.951197
Target:  5'- uGUCg-UCAAGGCGcuuguuGAGGAGcgCGGCu -3'
miRNA:   3'- -CAGgaAGUUCCGC------UUCCUUuaGCUGc -5'
18382 5' -49.2 NC_004681.1 + 30472 0.68 0.941654
Target:  5'- -gCCUUgGAGGUGcGGGAGuauggcUCGACGu -3'
miRNA:   3'- caGGAAgUUCCGCuUCCUUu-----AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 31067 0.67 0.976203
Target:  5'- gGUCCcaCGAGuugaagccgcccGCGAGGGAGuccUCGACGu -3'
miRNA:   3'- -CAGGaaGUUC------------CGCUUCCUUu--AGCUGC- -5'
18382 5' -49.2 NC_004681.1 + 32216 0.68 0.941654
Target:  5'- cGUCCcUCGGGGCaagGAGGGAAGgacccUCGGgGg -3'
miRNA:   3'- -CAGGaAGUUCCG---CUUCCUUU-----AGCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.