Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18382 | 5' | -49.2 | NC_004681.1 | + | 75217 | 0.69 | 0.936459 |
Target: 5'- -gCCga-AGGcGCGGAGGAAGuucUCGACGg -3' miRNA: 3'- caGGaagUUC-CGCUUCCUUU---AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 68776 | 0.68 | 0.951197 |
Target: 5'- cGUCCUUCAuGGCGccGcggucguucauGAAcgCGACGg -3' miRNA: 3'- -CAGGAAGUuCCGCuuC-----------CUUuaGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 68064 | 0.69 | 0.927552 |
Target: 5'- aGUCCUUCGAGGCGGgccuugaacgcuucaAGGucuUCGcccuCGg -3' miRNA: 3'- -CAGGAAGUUCCGCU---------------UCCuuuAGCu---GC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 67943 | 0.67 | 0.963452 |
Target: 5'- uUCCUcgGAGGCGgcGGcggucucAUCGACGg -3' miRNA: 3'- cAGGAagUUCCGCuuCCuu-----UAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 67029 | 0.66 | 0.981186 |
Target: 5'- -aCCUUCAucGGUGAuggucAGGgcGUUGGCGa -3' miRNA: 3'- caGGAAGUu-CCGCU-----UCCuuUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 66585 | 0.73 | 0.734508 |
Target: 5'- cGUCCUUCGucAGGCGcAGGAgcucccAGUCGcGCGg -3' miRNA: 3'- -CAGGAAGU--UCCGCuUCCU------UUAGC-UGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 62113 | 0.68 | 0.955552 |
Target: 5'- uGUUCUUgAGGGCGAGGucGAccucaaucUCGGCGg -3' miRNA: 3'- -CAGGAAgUUCCGCUUCcuUU--------AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61849 | 0.66 | 0.978553 |
Target: 5'- -gCCUUgAguuGGGCGggGGAcuucaucAGUUGACa -3' miRNA: 3'- caGGAAgU---UCCGCuuCCU-------UUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61332 | 0.69 | 0.925211 |
Target: 5'- cGUCa-UCGAGGUGGAGGuagacgAGAUCGGCc -3' miRNA: 3'- -CAGgaAGUUCCGCUUCC------UUUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61299 | 0.68 | 0.959635 |
Target: 5'- cUCCUUCGAGaCcAAGGAGggCGACa -3' miRNA: 3'- cAGGAAGUUCcGcUUCCUUuaGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 60954 | 0.74 | 0.679769 |
Target: 5'- -aCCUgCGAGGCGGGgauguGGAAGUCGACc -3' miRNA: 3'- caGGAaGUUCCGCUU-----CCUUUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 51240 | 0.66 | 0.983363 |
Target: 5'- -gUCUUCGGGuCGAAGGGAAUCuuCGa -3' miRNA: 3'- caGGAAGUUCcGCUUCCUUUAGcuGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 45375 | 0.67 | 0.976203 |
Target: 5'- -aCCUcCAAGGCGggGGAGcaccucAagGGCa -3' miRNA: 3'- caGGAaGUUCCGCuuCCUU------UagCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 41237 | 0.68 | 0.955552 |
Target: 5'- -cCCaUCGAGGUGGAGGAGG-CGuACa -3' miRNA: 3'- caGGaAGUUCCGCUUCCUUUaGC-UGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 36029 | 0.67 | 0.96701 |
Target: 5'- gGUCUUgccccaCGAGGCGuGGGAGG-CGAUGg -3' miRNA: 3'- -CAGGAa-----GUUCCGCuUCCUUUaGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 32216 | 0.68 | 0.941654 |
Target: 5'- cGUCCcUCGGGGCaagGAGGGAAGgacccUCGGgGg -3' miRNA: 3'- -CAGGaAGUUCCG---CUUCCUUU-----AGCUgC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 31067 | 0.67 | 0.976203 |
Target: 5'- gGUCCcaCGAGuugaagccgcccGCGAGGGAGuccUCGACGu -3' miRNA: 3'- -CAGGaaGUUC------------CGCUUCCUUu--AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 30472 | 0.68 | 0.941654 |
Target: 5'- -gCCUUgGAGGUGcGGGAGuauggcUCGACGu -3' miRNA: 3'- caGGAAgUUCCGCuUCCUUu-----AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 29733 | 0.68 | 0.951197 |
Target: 5'- uGUCg-UCAAGGCGcuuguuGAGGAGcgCGGCu -3' miRNA: 3'- -CAGgaAGUUCCGC------UUCCUUuaGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 28094 | 0.69 | 0.935924 |
Target: 5'- -aCCUUCAAcGGCGGcaacaacGGGAccagCGACGg -3' miRNA: 3'- caGGAAGUU-CCGCU-------UCCUuua-GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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