Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18382 | 5' | -49.2 | NC_004681.1 | + | 12137 | 1.11 | 0.004852 |
Target: 5'- aGUCCUUCAAGGCGAAGGAAAUCGACGg -3' miRNA: 3'- -CAGGAAGUUCCGCUUCCUUUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 7724 | 0.66 | 0.981186 |
Target: 5'- aGUCCaccaUCGAGGUGGAGGucccCGAgGg -3' miRNA: 3'- -CAGGa---AGUUCCGCUUCCuuuaGCUgC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 45375 | 0.67 | 0.976203 |
Target: 5'- -aCCUcCAAGGCGggGGAGcaccucAagGGCa -3' miRNA: 3'- caGGAaGUUCCGCuuCCUU------UagCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 6223 | 0.67 | 0.963452 |
Target: 5'- --aCUggGAGGCGAAGuccGAGUCGACGc -3' miRNA: 3'- cagGAagUUCCGCUUCc--UUUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 18834 | 0.67 | 0.961957 |
Target: 5'- -gCC-UCAugggggcggagcuGGCGAAGGAAuacAUCGACGc -3' miRNA: 3'- caGGaAGUu------------CCGCUUCCUU---UAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61299 | 0.68 | 0.959635 |
Target: 5'- cUCCUUCGAGaCcAAGGAGggCGACa -3' miRNA: 3'- cAGGAAGUUCcGcUUCCUUuaGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 28094 | 0.69 | 0.935924 |
Target: 5'- -aCCUUCAAcGGCGGcaacaacGGGAccagCGACGg -3' miRNA: 3'- caGGAAGUU-CCGCU-------UCCUuua-GCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 61332 | 0.69 | 0.925211 |
Target: 5'- cGUCa-UCGAGGUGGAGGuagacgAGAUCGGCc -3' miRNA: 3'- -CAGgaAGUUCCGCUUCC------UUUAGCUGc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 14169 | 0.69 | 0.912816 |
Target: 5'- cUUCggCAAGGCGGgcaAGGAAGUCGGu- -3' miRNA: 3'- cAGGaaGUUCCGCU---UCCUUUAGCUgc -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 590 | 0.7 | 0.88464 |
Target: 5'- uUCCUUCAGGGCGcc----AUCGACGc -3' miRNA: 3'- cAGGAAGUUCCGCuuccuuUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 12487 | 0.71 | 0.868924 |
Target: 5'- -aCCUUCAAGGUGAccgcGGAAGgcagcaaCGGCGa -3' miRNA: 3'- caGGAAGUUCCGCUu---CCUUUa------GCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 1551 | 0.74 | 0.701888 |
Target: 5'- -gCCUUCAGcugggcGGCGggGGAGAggaaGACGg -3' miRNA: 3'- caGGAAGUU------CCGCuuCCUUUag--CUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 18202 | 0.68 | 0.942158 |
Target: 5'- gGUCCUUUAucgaguagcccagucGGCGGAGGGAcuguaggCGGCGg -3' miRNA: 3'- -CAGGAAGUu--------------CCGCUUCCUUua-----GCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 32216 | 0.68 | 0.941654 |
Target: 5'- cGUCCcUCGGGGCaagGAGGGAAGgacccUCGGgGg -3' miRNA: 3'- -CAGGaAGUUCCG---CUUCCUUU-----AGCUgC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 30472 | 0.68 | 0.941654 |
Target: 5'- -gCCUUgGAGGUGcGGGAGuauggcUCGACGu -3' miRNA: 3'- caGGAAgUUCCGCuUCCUUu-----AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 75217 | 0.69 | 0.936459 |
Target: 5'- -gCCga-AGGcGCGGAGGAAGuucUCGACGg -3' miRNA: 3'- caGGaagUUC-CGCUUCCUUU---AGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 68064 | 0.69 | 0.927552 |
Target: 5'- aGUCCUUCGAGGCGGgccuugaacgcuucaAGGucuUCGcccuCGg -3' miRNA: 3'- -CAGGAAGUUCCGCU---------------UCCuuuAGCu---GC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 66585 | 0.73 | 0.734508 |
Target: 5'- cGUCCUUCGucAGGCGcAGGAgcucccAGUCGcGCGg -3' miRNA: 3'- -CAGGAAGU--UCCGCuUCCU------UUAGC-UGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 631 | 0.74 | 0.701888 |
Target: 5'- uGUCC-UCAAGGCGGAu---GUCGACGg -3' miRNA: 3'- -CAGGaAGUUCCGCUUccuuUAGCUGC- -5' |
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18382 | 5' | -49.2 | NC_004681.1 | + | 9335 | 0.66 | 0.987139 |
Target: 5'- -cCCUUacgucaGAGaGCGGAGGugGUCGGCc -3' miRNA: 3'- caGGAAg-----UUC-CGCUUCCuuUAGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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