miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 69251 0.66 0.833635
Target:  5'- gGCCcAugGCGCCCUUgACg-GCGCg -3'
miRNA:   3'- gCGGcUugUGCGGGAAgUGgaUGUGg -5'
18383 5' -54.5 NC_004681.1 + 7251 0.66 0.858812
Target:  5'- gGCCauccacGACGCGgCCgucCACCUcgGCGCCg -3'
miRNA:   3'- gCGGc-----UUGUGCgGGaa-GUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 10287 0.66 0.850635
Target:  5'- aGCUGAucgACGuCGCCaUUCGCCUcGCGCg -3'
miRNA:   3'- gCGGCU---UGU-GCGGgAAGUGGA-UGUGg -5'
18383 5' -54.5 NC_004681.1 + 13290 0.66 0.833635
Target:  5'- aGuCCGAGgGCGCCCUgucgaGCCUggagaucgAgGCCg -3'
miRNA:   3'- gC-GGCUUgUGCGGGAag---UGGA--------UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 22411 0.66 0.858812
Target:  5'- gGCCGcGgACGgcaaCCCUcCGCaCUACACCc -3'
miRNA:   3'- gCGGCuUgUGC----GGGAaGUG-GAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 56013 0.66 0.858812
Target:  5'- aCGCCaagGAGgGCGaCCUccgcaUCGCCUuCACCg -3'
miRNA:   3'- -GCGG---CUUgUGCgGGA-----AGUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50456 0.66 0.866764
Target:  5'- aCGUCGuggGCgACGCCCaccccgaccgUguCCUGCGCCa -3'
miRNA:   3'- -GCGGCu--UG-UGCGGGa---------AguGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 21357 0.66 0.84224
Target:  5'- uGCgGAuCAC-CUCUUCGCCgACACUg -3'
miRNA:   3'- gCGgCUuGUGcGGGAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66757 0.66 0.858812
Target:  5'- gGCCGGugGCaACGCC----GCCUACAUCg -3'
miRNA:   3'- gCGGCU--UG-UGCGGgaagUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 12972 0.66 0.858812
Target:  5'- gGCCuGAcguCGCGCUCacCGgCUACACCg -3'
miRNA:   3'- gCGG-CUu--GUGCGGGaaGUgGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 9664 0.66 0.850635
Target:  5'- gGCCGGGuCACcucgGCCCccUCAUUUACACg -3'
miRNA:   3'- gCGGCUU-GUG----CGGGa-AGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 15361 0.66 0.824828
Target:  5'- cCGCCGAGgGuaaGgCgUUCGCCgACGCCa -3'
miRNA:   3'- -GCGGCUUgUg--CgGgAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 29497 0.66 0.84224
Target:  5'- gGCCGAugAUGCCCa--GCUUcCACa -3'
miRNA:   3'- gCGGCUugUGCGGGaagUGGAuGUGg -5'
18383 5' -54.5 NC_004681.1 + 44814 0.66 0.866764
Target:  5'- cCGCUGucCGCGUUg--CGCUUGCACCa -3'
miRNA:   3'- -GCGGCuuGUGCGGgaaGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 5013 0.66 0.858812
Target:  5'- -cCCGGGCAUGacgugcccCCCUUCACUgGCAUCc -3'
miRNA:   3'- gcGGCUUGUGC--------GGGAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33297 0.66 0.858812
Target:  5'- aCGCCGGuCGCGCCgCgguguaCGCCgggacguuCGCCg -3'
miRNA:   3'- -GCGGCUuGUGCGG-Gaa----GUGGau------GUGG- -5'
18383 5' -54.5 NC_004681.1 + 44140 0.66 0.824828
Target:  5'- cCGCgGGcCugGCCC-UCACCg--GCCg -3'
miRNA:   3'- -GCGgCUuGugCGGGaAGUGGaugUGG- -5'
18383 5' -54.5 NC_004681.1 + 64486 0.66 0.84224
Target:  5'- uCGCCGGuccauuccuGguCGCCggUCACCUgacgaACACCc -3'
miRNA:   3'- -GCGGCU---------UguGCGGgaAGUGGA-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 63850 0.66 0.850635
Target:  5'- -uCCGGGCGgGCCUU--GCCUcGCGCCg -3'
miRNA:   3'- gcGGCUUGUgCGGGAagUGGA-UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22641 0.66 0.84224
Target:  5'- gCGCCGcGCGCaaGCagaUCGCCUACGuCCg -3'
miRNA:   3'- -GCGGCuUGUG--CGggaAGUGGAUGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.