miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 44140 0.66 0.824828
Target:  5'- cCGCgGGcCugGCCC-UCACCg--GCCg -3'
miRNA:   3'- -GCGgCUuGugCGGGaAGUGGaugUGG- -5'
18383 5' -54.5 NC_004681.1 + 15361 0.66 0.824828
Target:  5'- cCGCCGAGgGuaaGgCgUUCGCCgACGCCa -3'
miRNA:   3'- -GCGGCUUgUg--CgGgAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 13290 0.66 0.833635
Target:  5'- aGuCCGAGgGCGCCCUgucgaGCCUggagaucgAgGCCg -3'
miRNA:   3'- gC-GGCUUgUGCGGGAag---UGGA--------UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 63850 0.66 0.850635
Target:  5'- -uCCGGGCGgGCCUU--GCCUcGCGCCg -3'
miRNA:   3'- gcGGCUUGUgCGGGAagUGGA-UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 7251 0.66 0.858812
Target:  5'- gGCCauccacGACGCGgCCgucCACCUcgGCGCCg -3'
miRNA:   3'- gCGGc-----UUGUGCgGGaa-GUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 10287 0.66 0.850635
Target:  5'- aGCUGAucgACGuCGCCaUUCGCCUcGCGCg -3'
miRNA:   3'- gCGGCU---UGU-GCGGgAAGUGGA-UGUGg -5'
18383 5' -54.5 NC_004681.1 + 9664 0.66 0.850635
Target:  5'- gGCCGGGuCACcucgGCCCccUCAUUUACACg -3'
miRNA:   3'- gCGGCUU-GUG----CGGGa-AGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 64486 0.66 0.84224
Target:  5'- uCGCCGGuccauuccuGguCGCCggUCACCUgacgaACACCc -3'
miRNA:   3'- -GCGGCU---------UguGCGGgaAGUGGA-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22641 0.66 0.84224
Target:  5'- gCGCCGcGCGCaaGCagaUCGCCUACGuCCg -3'
miRNA:   3'- -GCGGCuUGUG--CGggaAGUGGAUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 40050 0.67 0.778092
Target:  5'- aGCCGAucccGCAgGCCga-CGCCaGCACCc -3'
miRNA:   3'- gCGGCU----UGUgCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 21112 0.67 0.797288
Target:  5'- cCGCUGGACACGCUCaugaCGCCcAUugUg -3'
miRNA:   3'- -GCGGCUUGUGCGGGaa--GUGGaUGugG- -5'
18383 5' -54.5 NC_004681.1 + 23411 0.67 0.797288
Target:  5'- -aCCGAcaACACGCUgUUCACCgucgACcucgGCCa -3'
miRNA:   3'- gcGGCU--UGUGCGGgAAGUGGa---UG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 28648 0.67 0.806645
Target:  5'- uGgCGAACuuGCCCgccacCACCUugGCg -3'
miRNA:   3'- gCgGCUUGugCGGGaa---GUGGAugUGg -5'
18383 5' -54.5 NC_004681.1 + 70853 0.67 0.806645
Target:  5'- gGCCGcAGCAUGCCCUcagccauccUUGCgUugACUg -3'
miRNA:   3'- gCGGC-UUGUGCGGGA---------AGUGgAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 45122 0.67 0.806645
Target:  5'- aCGCCGu-CGCGCagguCUaCACCUACaacgACCg -3'
miRNA:   3'- -GCGGCuuGUGCGg---GAaGUGGAUG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 51880 0.67 0.806645
Target:  5'- gGUCGGcgaacguguugGCACGCCCgau-CCgGCGCCg -3'
miRNA:   3'- gCGGCU-----------UGUGCGGGaaguGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 129 0.67 0.815829
Target:  5'- aGCCuggaAACugGCUCUg-ACCUGCACa -3'
miRNA:   3'- gCGGc---UUGugCGGGAagUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 45113 0.67 0.815829
Target:  5'- cCGUCGAGCuCGCCCcacaugugggagUUCGCac-CGCCa -3'
miRNA:   3'- -GCGGCUUGuGCGGG------------AAGUGgauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 37798 0.67 0.806645
Target:  5'- gGCCGGAUG-GCCCUcgGCCUACGu- -3'
miRNA:   3'- gCGGCUUGUgCGGGAagUGGAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 39769 0.67 0.815829
Target:  5'- gCGCUGAugACGUUC-UCG-CUGCACUg -3'
miRNA:   3'- -GCGGCUugUGCGGGaAGUgGAUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.