Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 23411 | 0.67 | 0.797288 |
Target: 5'- -aCCGAcaACACGCUgUUCACCgucgACcucgGCCa -3' miRNA: 3'- gcGGCU--UGUGCGGgAAGUGGa---UG----UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 13713 | 0.67 | 0.778092 |
Target: 5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3' miRNA: 3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 43330 | 0.67 | 0.797288 |
Target: 5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3' miRNA: 3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 33548 | 0.67 | 0.797288 |
Target: 5'- -cCCGAGCugGgCCUUCuuccagGCCgugaagGCGCCu -3' miRNA: 3'- gcGGCUUGugCgGGAAG------UGGa-----UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 28648 | 0.67 | 0.806645 |
Target: 5'- uGgCGAACuuGCCCgccacCACCUugGCg -3' miRNA: 3'- gCgGCUUGugCGGGaa---GUGGAugUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 70470 | 0.67 | 0.787767 |
Target: 5'- cCGCUgguGAACAUGCaCUUCACCgggagGCguGCCa -3' miRNA: 3'- -GCGG---CUUGUGCGgGAAGUGGa----UG--UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 45113 | 0.67 | 0.815829 |
Target: 5'- cCGUCGAGCuCGCCCcacaugugggagUUCGCac-CGCCa -3' miRNA: 3'- -GCGGCUUGuGCGGG------------AAGUGgauGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 37798 | 0.67 | 0.806645 |
Target: 5'- gGCCGGAUG-GCCCUcgGCCUACGu- -3' miRNA: 3'- gCGGCUUGUgCGGGAagUGGAUGUgg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 21112 | 0.67 | 0.797288 |
Target: 5'- cCGCUGGACACGCUCaugaCGCCcAUugUg -3' miRNA: 3'- -GCGGCUUGUGCGGGaa--GUGGaUGugG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 2996 | 0.67 | 0.778092 |
Target: 5'- aGCCGGAUAccCGCUCUcCuacgaCUACGCCa -3' miRNA: 3'- gCGGCUUGU--GCGGGAaGug---GAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 69748 | 0.68 | 0.738057 |
Target: 5'- uCGCgguaGAACGCGCg---CAUCUGCGCCg -3' miRNA: 3'- -GCGg---CUUGUGCGggaaGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 39203 | 0.68 | 0.734981 |
Target: 5'- aCGUCGAGgACGUcagCCUggucgacugucagcUCACCgUGCGCCg -3' miRNA: 3'- -GCGGCUUgUGCG---GGA--------------AGUGG-AUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 75336 | 0.68 | 0.747231 |
Target: 5'- gGCCGggUccagcuugACGCCCagCAUCUcggccagGCGCCu -3' miRNA: 3'- gCGGCuuG--------UGCGGGaaGUGGA-------UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 15653 | 0.68 | 0.75832 |
Target: 5'- uGCCGAucaccuCGCGCUCagCACCaGCAgCCu -3' miRNA: 3'- gCGGCUu-----GUGCGGGaaGUGGaUGU-GG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 42602 | 0.68 | 0.738057 |
Target: 5'- uGCgCGAugAUGCCCUUgucgUugCUuaGCGCCu -3' miRNA: 3'- gCG-GCUugUGCGGGAA----GugGA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 50777 | 0.68 | 0.748245 |
Target: 5'- uGCCGcccGCGcCGCCCUcugcggUCACCguguuguCGCCa -3' miRNA: 3'- gCGGCu--UGU-GCGGGA------AGUGGau-----GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 60700 | 0.68 | 0.717388 |
Target: 5'- gGCCGucucgaugagGAUGCGaCCCcgcgugaCACCUACGCCg -3' miRNA: 3'- gCGGC----------UUGUGC-GGGaa-----GUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 47057 | 0.68 | 0.717388 |
Target: 5'- uGCaCGAGCGCGCaCCc-CGCCaggaACGCCg -3' miRNA: 3'- gCG-GCUUGUGCG-GGaaGUGGa---UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 43985 | 0.68 | 0.717388 |
Target: 5'- gGCCGAGgACGUCaaaCAUCcGCACCa -3' miRNA: 3'- gCGGCUUgUGCGGgaaGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19492 | 0.68 | 0.748245 |
Target: 5'- cCGCuUGAAgGCGCgCUgCACCUuggACGCCu -3' miRNA: 3'- -GCG-GCUUgUGCGgGAaGUGGA---UGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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