Results 41 - 60 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 48216 | 0.7 | 0.621599 |
Target: 5'- gCGCCuacaAGCugGCCC-UCGCCgaggcuCGCCa -3' miRNA: 3'- -GCGGc---UUGugCGGGaAGUGGau----GUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 14564 | 0.69 | 0.664496 |
Target: 5'- cCGCCac-CACGgCCgcagUCGCCUucgGCACCg -3' miRNA: 3'- -GCGGcuuGUGCgGGa---AGUGGA---UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 54273 | 0.69 | 0.68581 |
Target: 5'- cCGCCGAagaggcGCugGUCC-UCGCC--CACCu -3' miRNA: 3'- -GCGGCU------UGugCGGGaAGUGGauGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 42946 | 0.69 | 0.664496 |
Target: 5'- gCGCCGAAC-CGUUCgagggUCACCUcucggacaaccuGCGCUa -3' miRNA: 3'- -GCGGCUUGuGCGGGa----AGUGGA------------UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 64817 | 0.69 | 0.706928 |
Target: 5'- cCGCCuccgaGGGCAC-CCCgugggacuggUACCUGCGCCg -3' miRNA: 3'- -GCGG-----CUUGUGcGGGaa--------GUGGAUGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 63414 | 0.69 | 0.68581 |
Target: 5'- uCGCCGucCuCGUCCgUCACCggcuCACCg -3' miRNA: 3'- -GCGGCuuGuGCGGGaAGUGGau--GUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 22083 | 0.69 | 0.68581 |
Target: 5'- uGuuGAACGgGUUCUUCACUgcgGCACUc -3' miRNA: 3'- gCggCUUGUgCGGGAAGUGGa--UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 14774 | 0.69 | 0.696399 |
Target: 5'- aCGCCGcGgACGCCCUggcCAuCCUgaaggcugGCGCCc -3' miRNA: 3'- -GCGGCuUgUGCGGGAa--GU-GGA--------UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 49071 | 0.69 | 0.705878 |
Target: 5'- aGCCcgguaaugggaguGGACACGCCCUUguaGCCgaggUugGCCg -3' miRNA: 3'- gCGG-------------CUUGUGCGGGAAg--UGG----AugUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 17675 | 0.69 | 0.706928 |
Target: 5'- cCGCCGcAGaccuucUugGCCUcagUCACCUGCugCu -3' miRNA: 3'- -GCGGC-UU------GugCGGGa--AGUGGAUGugG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 41112 | 0.69 | 0.684748 |
Target: 5'- gGCCGaAGCGCGCgggaauucccaagCCcgCACCgaagGCGCCg -3' miRNA: 3'- gCGGC-UUGUGCG-------------GGaaGUGGa---UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 55912 | 0.69 | 0.706928 |
Target: 5'- uGuuGAGCAgGCCCgcggUgGCCUucAUGCCg -3' miRNA: 3'- gCggCUUGUgCGGGa---AgUGGA--UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 47057 | 0.68 | 0.717388 |
Target: 5'- uGCaCGAGCGCGCaCCc-CGCCaggaACGCCg -3' miRNA: 3'- gCG-GCUUGUGCG-GGaaGUGGa---UGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 42245 | 0.68 | 0.717388 |
Target: 5'- cCGCCGAGCugcugguccCGCCCgcggaaggCGCCUuCACg -3' miRNA: 3'- -GCGGCUUGu--------GCGGGaa------GUGGAuGUGg -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 43985 | 0.68 | 0.717388 |
Target: 5'- gGCCGAGgACGUCaaaCAUCcGCACCa -3' miRNA: 3'- gCGGCUUgUGCGGgaaGUGGaUGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 60700 | 0.68 | 0.717388 |
Target: 5'- gGCCGucucgaugagGAUGCGaCCCcgcgugaCACCUACGCCg -3' miRNA: 3'- gCGGC----------UUGUGC-GGGaa-----GUGGAUGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 9507 | 0.68 | 0.768273 |
Target: 5'- gCGCCGAAgaGCGCCUcg-GCCUGCugguguACCg -3' miRNA: 3'- -GCGGCUUg-UGCGGGaagUGGAUG------UGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 35914 | 0.68 | 0.738057 |
Target: 5'- cCGCCcGAUACG-CCUUCGCau-CGCCg -3' miRNA: 3'- -GCGGcUUGUGCgGGAAGUGgauGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 39203 | 0.68 | 0.734981 |
Target: 5'- aCGUCGAGgACGUcagCCUggucgacugucagcUCACCgUGCGCCg -3' miRNA: 3'- -GCGGCUUgUGCG---GGA--------------AGUGG-AUGUGG- -5' |
|||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 43678 | 0.68 | 0.7452 |
Target: 5'- cCGCCGAucaaccccuccaacACAC-CCCgcCGCCgcagUACACCg -3' miRNA: 3'- -GCGGCU--------------UGUGcGGGaaGUGG----AUGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home