miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 12343 1.13 0.001115
Target:  5'- uCGCCGAACACGCCCUUCACCUACACCg -3'
miRNA:   3'- -GCGGCUUGUGCGGGAAGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 3193 0.82 0.139407
Target:  5'- gGCCGAACACGCCUcgugucgagUUCugCaACACCa -3'
miRNA:   3'- gCGGCUUGUGCGGG---------AAGugGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 61681 0.78 0.242014
Target:  5'- uGCCGAAgAUGCCCUgCACCUuCugCa -3'
miRNA:   3'- gCGGCUUgUGCGGGAaGUGGAuGugG- -5'
18383 5' -54.5 NC_004681.1 + 8040 0.77 0.260988
Target:  5'- gGCCGAACACGCCCggguggaGgCUACgGCCg -3'
miRNA:   3'- gCGGCUUGUGCGGGaag----UgGAUG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 15682 0.77 0.281157
Target:  5'- aCGUCGAGCACGCCUcggaggUCAUggACACCu -3'
miRNA:   3'- -GCGGCUUGUGCGGGa-----AGUGgaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39083 0.76 0.317484
Target:  5'- gCGCCGuGCAaGCCCUgguggcCACCUGCGCg -3'
miRNA:   3'- -GCGGCuUGUgCGGGAa-----GUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 59621 0.76 0.32516
Target:  5'- cCGCCGAAgGCgugGCCgUUCugCUugGCCu -3'
miRNA:   3'- -GCGGCUUgUG---CGGgAAGugGAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 7579 0.75 0.340923
Target:  5'- gGCCGGGgAgGCCgUgauggCACCUACGCCc -3'
miRNA:   3'- gCGGCUUgUgCGGgAa----GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 46127 0.75 0.374081
Target:  5'- aGCUGcGCGCGgCCggUCgACCUACGCCa -3'
miRNA:   3'- gCGGCuUGUGCgGGa-AG-UGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66783 0.75 0.382705
Target:  5'- aCGCUGAGCACuCCCUggACCccgagUACGCCa -3'
miRNA:   3'- -GCGGCUUGUGcGGGAagUGG-----AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 75245 0.74 0.400345
Target:  5'- gCGUCGAugGCGCCCUgaaggaacUCGCCUggggauGCgGCCg -3'
miRNA:   3'- -GCGGCUugUGCGGGA--------AGUGGA------UG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 38220 0.73 0.437137
Target:  5'- gGCCGAAgACGuCCCgcggcggCGCCauagGCACCg -3'
miRNA:   3'- gCGGCUUgUGC-GGGaa-----GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 52628 0.73 0.453351
Target:  5'- cCGCCGAACACGCCCUcCAggaaguugagcaacCCUgagaggucgAUGCCc -3'
miRNA:   3'- -GCGGCUUGUGCGGGAaGU--------------GGA---------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 62777 0.73 0.465969
Target:  5'- cCGCCGAGUugGCUa-UCGCCaACGCCa -3'
miRNA:   3'- -GCGGCUUGugCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 56235 0.73 0.475797
Target:  5'- aCGCCGcAGCGCGCCCagaGCUcgUugACCg -3'
miRNA:   3'- -GCGGC-UUGUGCGGGaagUGG--AugUGG- -5'
18383 5' -54.5 NC_004681.1 + 69114 0.72 0.505876
Target:  5'- gCGCCGccucgccCGCGCCCUggccucccUCGCCUaccggcucggcuACACCa -3'
miRNA:   3'- -GCGGCuu-----GUGCGGGA--------AGUGGA------------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50937 0.72 0.505876
Target:  5'- uCGUCGGucACGCGCUggccaaguucggCUaCACCUACGCCg -3'
miRNA:   3'- -GCGGCU--UGUGCGG------------GAaGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 7881 0.72 0.516084
Target:  5'- uCGUCGu-CAaGCUCUUCGCCUACGCa -3'
miRNA:   3'- -GCGGCuuGUgCGGGAAGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 33378 0.72 0.526374
Target:  5'- gCGUCGcGCGCGCCgUguggCACCUGaACCg -3'
miRNA:   3'- -GCGGCuUGUGCGGgAa---GUGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 45251 0.72 0.53674
Target:  5'- gGCagCGAAC-CGCCUUggCGCUUGCGCCg -3'
miRNA:   3'- gCG--GCUUGuGCGGGAa-GUGGAUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.