Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 69748 | 0.68 | 0.738057 |
Target: 5'- uCGCgguaGAACGCGCg---CAUCUGCGCCg -3' miRNA: 3'- -GCGg---CUUGUGCGggaaGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 42602 | 0.68 | 0.738057 |
Target: 5'- uGCgCGAugAUGCCCUUgucgUugCUuaGCGCCu -3' miRNA: 3'- gCG-GCUugUGCGGGAA----GugGA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 43678 | 0.68 | 0.7452 |
Target: 5'- cCGCCGAucaaccccuccaacACAC-CCCgcCGCCgcagUACACCg -3' miRNA: 3'- -GCGGCU--------------UGUGcGGGaaGUGG----AUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 75336 | 0.68 | 0.747231 |
Target: 5'- gGCCGggUccagcuugACGCCCagCAUCUcggccagGCGCCu -3' miRNA: 3'- gCGGCuuG--------UGCGGGaaGUGGA-------UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 50777 | 0.68 | 0.748245 |
Target: 5'- uGCCGcccGCGcCGCCCUcugcggUCACCguguuguCGCCa -3' miRNA: 3'- gCGGCu--UGU-GCGGGA------AGUGGau-----GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 65161 | 0.68 | 0.748245 |
Target: 5'- cCGCCuuGCACGCgacggCCgcgggCACCggggGCGCCa -3' miRNA: 3'- -GCGGcuUGUGCG-----GGaa---GUGGa---UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19492 | 0.68 | 0.748245 |
Target: 5'- cCGCuUGAAgGCGCgCUgCACCUuggACGCCu -3' miRNA: 3'- -GCG-GCUUgUGCGgGAaGUGGA---UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 9751 | 0.68 | 0.756314 |
Target: 5'- cCGCUGAuCAUcCCCgcgguccacucCGCCUACGCCa -3' miRNA: 3'- -GCGGCUuGUGcGGGaa---------GUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 9077 | 0.68 | 0.75832 |
Target: 5'- uCGCUGAAgUAUGgCCgcgucgUCACCgGCGCCg -3' miRNA: 3'- -GCGGCUU-GUGCgGGa-----AGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 15653 | 0.68 | 0.75832 |
Target: 5'- uGCCGAucaccuCGCGCUCagCACCaGCAgCCu -3' miRNA: 3'- gCGGCUu-----GUGCGGGaaGUGGaUGU-GG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 9507 | 0.68 | 0.768273 |
Target: 5'- gCGCCGAAgaGCGCCUcg-GCCUGCugguguACCg -3' miRNA: 3'- -GCGGCUUg-UGCGGGaagUGGAUG------UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 13713 | 0.67 | 0.778092 |
Target: 5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3' miRNA: 3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 61377 | 0.67 | 0.778092 |
Target: 5'- gCGgCGcGCGCGgCgUUCGCCUcCGCCu -3' miRNA: 3'- -GCgGCuUGUGCgGgAAGUGGAuGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 2996 | 0.67 | 0.778092 |
Target: 5'- aGCCGGAUAccCGCUCUcCuacgaCUACGCCa -3' miRNA: 3'- gCGGCUUGU--GCGGGAaGug---GAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 40050 | 0.67 | 0.778092 |
Target: 5'- aGCCGAucccGCAgGCCga-CGCCaGCACCc -3' miRNA: 3'- gCGGCU----UGUgCGGgaaGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 70470 | 0.67 | 0.787767 |
Target: 5'- cCGCUgguGAACAUGCaCUUCACCgggagGCguGCCa -3' miRNA: 3'- -GCGG---CUUGUGCGgGAAGUGGa----UG--UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 21112 | 0.67 | 0.797288 |
Target: 5'- cCGCUGGACACGCUCaugaCGCCcAUugUg -3' miRNA: 3'- -GCGGCUUGUGCGGGaa--GUGGaUGugG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 39786 | 0.67 | 0.797288 |
Target: 5'- cCGCC--GCGCGaCCaUCGCCUcccACGCCu -3' miRNA: 3'- -GCGGcuUGUGCgGGaAGUGGA---UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 43330 | 0.67 | 0.797288 |
Target: 5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3' miRNA: 3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 23411 | 0.67 | 0.797288 |
Target: 5'- -aCCGAcaACACGCUgUUCACCgucgACcucgGCCa -3' miRNA: 3'- gcGGCU--UGUGCGGgAAGUGGa---UG----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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