Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 50456 | 0.66 | 0.866764 |
Target: 5'- aCGUCGuggGCgACGCCCaccccgaccgUguCCUGCGCCa -3' miRNA: 3'- -GCGGCu--UG-UGCGGGa---------AguGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 44814 | 0.66 | 0.866764 |
Target: 5'- cCGCUGucCGCGUUg--CGCUUGCACCa -3' miRNA: 3'- -GCGGCuuGUGCGGgaaGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 74297 | 0.66 | 0.866764 |
Target: 5'- aGCUGAagGCugGCCCggUCACCaggggugAguCCg -3' miRNA: 3'- gCGGCU--UGugCGGGa-AGUGGa------UguGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 50052 | 0.66 | 0.864403 |
Target: 5'- uCGCCGAgccgauccgaaaguGCAUGUCCggggUCAgCggcACGCCc -3' miRNA: 3'- -GCGGCU--------------UGUGCGGGa---AGUgGa--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 12972 | 0.66 | 0.858812 |
Target: 5'- gGCCuGAcguCGCGCUCacCGgCUACACCg -3' miRNA: 3'- gCGG-CUu--GUGCGGGaaGUgGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 5013 | 0.66 | 0.858812 |
Target: 5'- -cCCGGGCAUGacgugcccCCCUUCACUgGCAUCc -3' miRNA: 3'- gcGGCUUGUGC--------GGGAAGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 56013 | 0.66 | 0.858812 |
Target: 5'- aCGCCaagGAGgGCGaCCUccgcaUCGCCUuCACCg -3' miRNA: 3'- -GCGG---CUUgUGCgGGA-----AGUGGAuGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 22411 | 0.66 | 0.858812 |
Target: 5'- gGCCGcGgACGgcaaCCCUcCGCaCUACACCc -3' miRNA: 3'- gCGGCuUgUGC----GGGAaGUG-GAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 33297 | 0.66 | 0.858812 |
Target: 5'- aCGCCGGuCGCGCCgCgguguaCGCCgggacguuCGCCg -3' miRNA: 3'- -GCGGCUuGUGCGG-Gaa----GUGGau------GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19058 | 0.66 | 0.858812 |
Target: 5'- cCGCCGAGCuCGa-CUUCACUgucgagGCAUCc -3' miRNA: 3'- -GCGGCUUGuGCggGAAGUGGa-----UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 47789 | 0.66 | 0.858812 |
Target: 5'- cCGCCucGAC-CGCCag-CGCCaGCGCCg -3' miRNA: 3'- -GCGGc-UUGuGCGGgaaGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 66757 | 0.66 | 0.858812 |
Target: 5'- gGCCGGugGCaACGCC----GCCUACAUCg -3' miRNA: 3'- gCGGCU--UG-UGCGGgaagUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 7251 | 0.66 | 0.858812 |
Target: 5'- gGCCauccacGACGCGgCCgucCACCUcgGCGCCg -3' miRNA: 3'- gCGGc-----UUGUGCgGGaa-GUGGA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 63850 | 0.66 | 0.850635 |
Target: 5'- -uCCGGGCGgGCCUU--GCCUcGCGCCg -3' miRNA: 3'- gcGGCUUGUgCGGGAagUGGA-UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 10287 | 0.66 | 0.850635 |
Target: 5'- aGCUGAucgACGuCGCCaUUCGCCUcGCGCg -3' miRNA: 3'- gCGGCU---UGU-GCGGgAAGUGGA-UGUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 9664 | 0.66 | 0.850635 |
Target: 5'- gGCCGGGuCACcucgGCCCccUCAUUUACACg -3' miRNA: 3'- gCGGCUU-GUG----CGGGa-AGUGGAUGUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 59558 | 0.66 | 0.850635 |
Target: 5'- aGCUGGua--GCCCUgCGCCUGgucCACCg -3' miRNA: 3'- gCGGCUugugCGGGAaGUGGAU---GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 50992 | 0.66 | 0.850635 |
Target: 5'- gGCCGc---CGCCCgcgcCGCCgACGCCg -3' miRNA: 3'- gCGGCuuguGCGGGaa--GUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 18438 | 0.66 | 0.848973 |
Target: 5'- uCGCgGAGCGCGCUgagauguuCCUGCGCUc -3' miRNA: 3'- -GCGgCUUGUGCGGgaagu---GGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 51663 | 0.66 | 0.845624 |
Target: 5'- aCGCCGAguaggucccaggagaACAgGCCCUUgGCg-GCGuCCg -3' miRNA: 3'- -GCGGCU---------------UGUgCGGGAAgUGgaUGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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