miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 21357 0.66 0.84224
Target:  5'- uGCgGAuCAC-CUCUUCGCCgACACUg -3'
miRNA:   3'- gCGgCUuGUGcGGGAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66330 0.66 0.84224
Target:  5'- gGCCGAG-GCGCUCUUCGgCgcGCACg -3'
miRNA:   3'- gCGGCUUgUGCGGGAAGUgGa-UGUGg -5'
18383 5' -54.5 NC_004681.1 + 29497 0.66 0.84224
Target:  5'- gGCCGAugAUGCCCa--GCUUcCACa -3'
miRNA:   3'- gCGGCUugUGCGGGaagUGGAuGUGg -5'
18383 5' -54.5 NC_004681.1 + 64486 0.66 0.84224
Target:  5'- uCGCCGGuccauuccuGguCGCCggUCACCUgacgaACACCc -3'
miRNA:   3'- -GCGGCU---------UguGCGGgaAGUGGA-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22641 0.66 0.84224
Target:  5'- gCGCCGcGCGCaaGCagaUCGCCUACGuCCg -3'
miRNA:   3'- -GCGGCuUGUG--CGggaAGUGGAUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 13290 0.66 0.833635
Target:  5'- aGuCCGAGgGCGCCCUgucgaGCCUggagaucgAgGCCg -3'
miRNA:   3'- gC-GGCUUgUGCGGGAag---UGGA--------UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 69251 0.66 0.833635
Target:  5'- gGCCcAugGCGCCCUUgACg-GCGCg -3'
miRNA:   3'- gCGGcUugUGCGGGAAgUGgaUGUGg -5'
18383 5' -54.5 NC_004681.1 + 15361 0.66 0.824828
Target:  5'- cCGCCGAGgGuaaGgCgUUCGCCgACGCCa -3'
miRNA:   3'- -GCGGCUUgUg--CgGgAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 44140 0.66 0.824828
Target:  5'- cCGCgGGcCugGCCC-UCACCg--GCCg -3'
miRNA:   3'- -GCGgCUuGugCGGGaAGUGGaugUGG- -5'
18383 5' -54.5 NC_004681.1 + 129 0.67 0.815829
Target:  5'- aGCCuggaAACugGCUCUg-ACCUGCACa -3'
miRNA:   3'- gCGGc---UUGugCGGGAagUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 62423 0.67 0.815829
Target:  5'- gCGCCG-ACAcCGCCC-UCuCCgcCGCCc -3'
miRNA:   3'- -GCGGCuUGU-GCGGGaAGuGGauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 45113 0.67 0.815829
Target:  5'- cCGUCGAGCuCGCCCcacaugugggagUUCGCac-CGCCa -3'
miRNA:   3'- -GCGGCUUGuGCGGG------------AAGUGgauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39769 0.67 0.815829
Target:  5'- gCGCUGAugACGUUC-UCG-CUGCACUg -3'
miRNA:   3'- -GCGGCUugUGCGGGaAGUgGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 28648 0.67 0.806645
Target:  5'- uGgCGAACuuGCCCgccacCACCUugGCg -3'
miRNA:   3'- gCgGCUUGugCGGGaa---GUGGAugUGg -5'
18383 5' -54.5 NC_004681.1 + 51880 0.67 0.806645
Target:  5'- gGUCGGcgaacguguugGCACGCCCgau-CCgGCGCCg -3'
miRNA:   3'- gCGGCU-----------UGUGCGGGaaguGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 37798 0.67 0.806645
Target:  5'- gGCCGGAUG-GCCCUcgGCCUACGu- -3'
miRNA:   3'- gCGGCUUGUgCGGGAagUGGAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 51403 0.67 0.806645
Target:  5'- aGCaGAACGUGCCCUcCGCgCUcaACGCCa -3'
miRNA:   3'- gCGgCUUGUGCGGGAaGUG-GA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 45122 0.67 0.806645
Target:  5'- aCGCCGu-CGCGCagguCUaCACCUACaacgACCg -3'
miRNA:   3'- -GCGGCuuGUGCGg---GAaGUGGAUG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 70853 0.67 0.806645
Target:  5'- gGCCGcAGCAUGCCCUcagccauccUUGCgUugACUg -3'
miRNA:   3'- gCGGC-UUGUGCGGGA---------AGUGgAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 68513 0.67 0.806645
Target:  5'- gGCuCGcGGCACGCCUgggCGCC-AUGCCg -3'
miRNA:   3'- gCG-GC-UUGUGCGGGaa-GUGGaUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.