miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 21112 0.67 0.797288
Target:  5'- cCGCUGGACACGCUCaugaCGCCcAUugUg -3'
miRNA:   3'- -GCGGCUUGUGCGGGaa--GUGGaUGugG- -5'
18383 5' -54.5 NC_004681.1 + 43330 0.67 0.797288
Target:  5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3'
miRNA:   3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33548 0.67 0.797288
Target:  5'- -cCCGAGCugGgCCUUCuuccagGCCgugaagGCGCCu -3'
miRNA:   3'- gcGGCUUGugCgGGAAG------UGGa-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 23411 0.67 0.797288
Target:  5'- -aCCGAcaACACGCUgUUCACCgucgACcucgGCCa -3'
miRNA:   3'- gcGGCU--UGUGCGGgAAGUGGa---UG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 39786 0.67 0.797288
Target:  5'- cCGCC--GCGCGaCCaUCGCCUcccACGCCu -3'
miRNA:   3'- -GCGGcuUGUGCgGGaAGUGGA---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 70470 0.67 0.787767
Target:  5'- cCGCUgguGAACAUGCaCUUCACCgggagGCguGCCa -3'
miRNA:   3'- -GCGG---CUUGUGCGgGAAGUGGa----UG--UGG- -5'
18383 5' -54.5 NC_004681.1 + 61377 0.67 0.778092
Target:  5'- gCGgCGcGCGCGgCgUUCGCCUcCGCCu -3'
miRNA:   3'- -GCgGCuUGUGCgGgAAGUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 2996 0.67 0.778092
Target:  5'- aGCCGGAUAccCGCUCUcCuacgaCUACGCCa -3'
miRNA:   3'- gCGGCUUGU--GCGGGAaGug---GAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 40050 0.67 0.778092
Target:  5'- aGCCGAucccGCAgGCCga-CGCCaGCACCc -3'
miRNA:   3'- gCGGCU----UGUgCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 13713 0.67 0.778092
Target:  5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3'
miRNA:   3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5'
18383 5' -54.5 NC_004681.1 + 9507 0.68 0.768273
Target:  5'- gCGCCGAAgaGCGCCUcg-GCCUGCugguguACCg -3'
miRNA:   3'- -GCGGCUUg-UGCGGGaagUGGAUG------UGG- -5'
18383 5' -54.5 NC_004681.1 + 15653 0.68 0.75832
Target:  5'- uGCCGAucaccuCGCGCUCagCACCaGCAgCCu -3'
miRNA:   3'- gCGGCUu-----GUGCGGGaaGUGGaUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 9077 0.68 0.75832
Target:  5'- uCGCUGAAgUAUGgCCgcgucgUCACCgGCGCCg -3'
miRNA:   3'- -GCGGCUU-GUGCgGGa-----AGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 9751 0.68 0.756314
Target:  5'- cCGCUGAuCAUcCCCgcgguccacucCGCCUACGCCa -3'
miRNA:   3'- -GCGGCUuGUGcGGGaa---------GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 65161 0.68 0.748245
Target:  5'- cCGCCuuGCACGCgacggCCgcgggCACCggggGCGCCa -3'
miRNA:   3'- -GCGGcuUGUGCG-----GGaa---GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50777 0.68 0.748245
Target:  5'- uGCCGcccGCGcCGCCCUcugcggUCACCguguuguCGCCa -3'
miRNA:   3'- gCGGCu--UGU-GCGGGA------AGUGGau-----GUGG- -5'
18383 5' -54.5 NC_004681.1 + 19492 0.68 0.748245
Target:  5'- cCGCuUGAAgGCGCgCUgCACCUuggACGCCu -3'
miRNA:   3'- -GCG-GCUUgUGCGgGAaGUGGA---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 75336 0.68 0.747231
Target:  5'- gGCCGggUccagcuugACGCCCagCAUCUcggccagGCGCCu -3'
miRNA:   3'- gCGGCuuG--------UGCGGGaaGUGGA-------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 43678 0.68 0.7452
Target:  5'- cCGCCGAucaaccccuccaacACAC-CCCgcCGCCgcagUACACCg -3'
miRNA:   3'- -GCGGCU--------------UGUGcGGGaaGUGG----AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 69748 0.68 0.738057
Target:  5'- uCGCgguaGAACGCGCg---CAUCUGCGCCg -3'
miRNA:   3'- -GCGg---CUUGUGCGggaaGUGGAUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.