miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 42602 0.68 0.738057
Target:  5'- uGCgCGAugAUGCCCUUgucgUugCUuaGCGCCu -3'
miRNA:   3'- gCG-GCUugUGCGGGAA----GugGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 35914 0.68 0.738057
Target:  5'- cCGCCcGAUACG-CCUUCGCau-CGCCg -3'
miRNA:   3'- -GCGGcUUGUGCgGGAAGUGgauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39203 0.68 0.734981
Target:  5'- aCGUCGAGgACGUcagCCUggucgacugucagcUCACCgUGCGCCg -3'
miRNA:   3'- -GCGGCUUgUGCG---GGA--------------AGUGG-AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 71343 0.68 0.727768
Target:  5'- aGUCGAGCAcauCGCCCUcagUgACCUucaACCa -3'
miRNA:   3'- gCGGCUUGU---GCGGGA---AgUGGAug-UGG- -5'
18383 5' -54.5 NC_004681.1 + 47057 0.68 0.717388
Target:  5'- uGCaCGAGCGCGCaCCc-CGCCaggaACGCCg -3'
miRNA:   3'- gCG-GCUUGUGCG-GGaaGUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 60700 0.68 0.717388
Target:  5'- gGCCGucucgaugagGAUGCGaCCCcgcgugaCACCUACGCCg -3'
miRNA:   3'- gCGGC----------UUGUGC-GGGaa-----GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 43985 0.68 0.717388
Target:  5'- gGCCGAGgACGUCaaaCAUCcGCACCa -3'
miRNA:   3'- gCGGCUUgUGCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 42245 0.68 0.717388
Target:  5'- cCGCCGAGCugcugguccCGCCCgcggaaggCGCCUuCACg -3'
miRNA:   3'- -GCGGCUUGu--------GCGGGaa------GUGGAuGUGg -5'
18383 5' -54.5 NC_004681.1 + 6601 0.68 0.717388
Target:  5'- aGCCGAugACGCgCUggcCACuCUGCAa- -3'
miRNA:   3'- gCGGCUugUGCGgGAa--GUG-GAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 17675 0.69 0.706928
Target:  5'- cCGCCGcAGaccuucUugGCCUcagUCACCUGCugCu -3'
miRNA:   3'- -GCGGC-UU------GugCGGGa--AGUGGAUGugG- -5'
18383 5' -54.5 NC_004681.1 + 64817 0.69 0.706928
Target:  5'- cCGCCuccgaGGGCAC-CCCgugggacuggUACCUGCGCCg -3'
miRNA:   3'- -GCGG-----CUUGUGcGGGaa--------GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 55912 0.69 0.706928
Target:  5'- uGuuGAGCAgGCCCgcggUgGCCUucAUGCCg -3'
miRNA:   3'- gCggCUUGUgCGGGa---AgUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 49071 0.69 0.705878
Target:  5'- aGCCcgguaaugggaguGGACACGCCCUUguaGCCgaggUugGCCg -3'
miRNA:   3'- gCGG-------------CUUGUGCGGGAAg--UGG----AugUGG- -5'
18383 5' -54.5 NC_004681.1 + 14774 0.69 0.696399
Target:  5'- aCGCCGcGgACGCCCUggcCAuCCUgaaggcugGCGCCc -3'
miRNA:   3'- -GCGGCuUgUGCGGGAa--GU-GGA--------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 54273 0.69 0.68581
Target:  5'- cCGCCGAagaggcGCugGUCC-UCGCC--CACCu -3'
miRNA:   3'- -GCGGCU------UGugCGGGaAGUGGauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 63414 0.69 0.68581
Target:  5'- uCGCCGucCuCGUCCgUCACCggcuCACCg -3'
miRNA:   3'- -GCGGCuuGuGCGGGaAGUGGau--GUGG- -5'
18383 5' -54.5 NC_004681.1 + 22083 0.69 0.68581
Target:  5'- uGuuGAACGgGUUCUUCACUgcgGCACUc -3'
miRNA:   3'- gCggCUUGUgCGGGAAGUGGa--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 41112 0.69 0.684748
Target:  5'- gGCCGaAGCGCGCgggaauucccaagCCcgCACCgaagGCGCCg -3'
miRNA:   3'- gCGGC-UUGUGCG-------------GGaaGUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 42946 0.69 0.664496
Target:  5'- gCGCCGAAC-CGUUCgagggUCACCUcucggacaaccuGCGCUa -3'
miRNA:   3'- -GCGGCUUGuGCGGGa----AGUGGA------------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 14564 0.69 0.664496
Target:  5'- cCGCCac-CACGgCCgcagUCGCCUucgGCACCg -3'
miRNA:   3'- -GCGGcuuGUGCgGGa---AGUGGA---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.