Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 28331 | 0.7 | 0.65379 |
Target: 5'- aCGCagaCGAACgAUGUCCUcgUCACCccgGCGCCg -3' miRNA: 3'- -GCG---GCUUG-UGCGGGA--AGUGGa--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 58228 | 0.7 | 0.65379 |
Target: 5'- gGUCGucCGCGCCCgagcCGCCgAUACCa -3' miRNA: 3'- gCGGCuuGUGCGGGaa--GUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 45831 | 0.7 | 0.650575 |
Target: 5'- aCGCCuGAugGCgucacucaugacgaGCCCaUCAUUUGCGCCg -3' miRNA: 3'- -GCGG-CUugUG--------------CGGGaAGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 58532 | 0.7 | 0.643066 |
Target: 5'- gGCCGAGCGCgacaaucauGCCCaggagACCUGgGCCa -3' miRNA: 3'- gCGGCUUGUG---------CGGGaag--UGGAUgUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 2836 | 0.7 | 0.632333 |
Target: 5'- gCGCaGAGCACGCgCCaaUCGCCUACgagacuucuACCg -3' miRNA: 3'- -GCGgCUUGUGCG-GGa-AGUGGAUG---------UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 31413 | 0.7 | 0.632333 |
Target: 5'- aCGCUGGGCGCGCgCgUC-CC-ACACCc -3' miRNA: 3'- -GCGGCUUGUGCGgGaAGuGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 58789 | 0.7 | 0.632333 |
Target: 5'- cCGUCGAggcGCGCGCCCaggagUugCUGgGCCu -3' miRNA: 3'- -GCGGCU---UGUGCGGGaa---GugGAUgUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 14465 | 0.7 | 0.621599 |
Target: 5'- aCGCCGcGCGCGCC----GCCUcCGCCg -3' miRNA: 3'- -GCGGCuUGUGCGGgaagUGGAuGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 48216 | 0.7 | 0.621599 |
Target: 5'- gCGCCuacaAGCugGCCC-UCGCCgaggcuCGCCa -3' miRNA: 3'- -GCGGc---UUGugCGGGaAGUGGau----GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 42896 | 0.7 | 0.621599 |
Target: 5'- cCGCCGAugAaGUCCUUCAgCgAUGCCg -3' miRNA: 3'- -GCGGCUugUgCGGGAAGUgGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 59458 | 0.7 | 0.610874 |
Target: 5'- gGCCGAgGCaacccacuugGCGCCCUcgUCGCCaccCACCg -3' miRNA: 3'- gCGGCU-UG----------UGCGGGA--AGUGGau-GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 29072 | 0.71 | 0.600166 |
Target: 5'- aCGCCGuGCGCGCgCagCGCCgguccCACCa -3' miRNA: 3'- -GCGGCuUGUGCGgGaaGUGGau---GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 59154 | 0.71 | 0.600166 |
Target: 5'- gGCCGGugcucggaGCGCCg-UCGCCaGCACCa -3' miRNA: 3'- gCGGCUug------UGCGGgaAGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 16217 | 0.71 | 0.600166 |
Target: 5'- uGCCGGAUgucgaGCGCCCUggugaCGCCaucCGCCu -3' miRNA: 3'- gCGGCUUG-----UGCGGGAa----GUGGau-GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 57885 | 0.71 | 0.600166 |
Target: 5'- gGCCcaccgGAGC-CGCCCUcggcacUCACCUGCggggACCg -3' miRNA: 3'- gCGG-----CUUGuGCGGGA------AGUGGAUG----UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 31168 | 0.71 | 0.589484 |
Target: 5'- cCGUCGAGgAgggUGUCCUUgGCCUGCACg -3' miRNA: 3'- -GCGGCUUgU---GCGGGAAgUGGAUGUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 2723 | 0.71 | 0.589484 |
Target: 5'- gCGCCGAACucguCGCCUccgaccaUCACCUguGgGCCg -3' miRNA: 3'- -GCGGCUUGu---GCGGGa------AGUGGA--UgUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19244 | 0.71 | 0.589484 |
Target: 5'- aCGuCCGcAGCaaGCGCCagguCUUCACCUGgACCg -3' miRNA: 3'- -GC-GGC-UUG--UGCGG----GAAGUGGAUgUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 33756 | 0.71 | 0.578837 |
Target: 5'- gGCCGAGCGCGgCUgggaGCUUccGCACCa -3' miRNA: 3'- gCGGCUUGUGCgGGaag-UGGA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 48139 | 0.71 | 0.566116 |
Target: 5'- gGCC---CGCGCCCUUCACUacgugaagaaggGCACCa -3' miRNA: 3'- gCGGcuuGUGCGGGAAGUGGa-----------UGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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