miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 129 0.67 0.815829
Target:  5'- aGCCuggaAACugGCUCUg-ACCUGCACa -3'
miRNA:   3'- gCGGc---UUGugCGGGAagUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 2723 0.71 0.589484
Target:  5'- gCGCCGAACucguCGCCUccgaccaUCACCUguGgGCCg -3'
miRNA:   3'- -GCGGCUUGu---GCGGGa------AGUGGA--UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 2836 0.7 0.632333
Target:  5'- gCGCaGAGCACGCgCCaaUCGCCUACgagacuucuACCg -3'
miRNA:   3'- -GCGgCUUGUGCG-GGa-AGUGGAUG---------UGG- -5'
18383 5' -54.5 NC_004681.1 + 2996 0.67 0.778092
Target:  5'- aGCCGGAUAccCGCUCUcCuacgaCUACGCCa -3'
miRNA:   3'- gCGGCUUGU--GCGGGAaGug---GAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 3193 0.82 0.139407
Target:  5'- gGCCGAACACGCCUcgugucgagUUCugCaACACCa -3'
miRNA:   3'- gCGGCUUGUGCGGG---------AAGugGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 5013 0.66 0.858812
Target:  5'- -cCCGGGCAUGacgugcccCCCUUCACUgGCAUCc -3'
miRNA:   3'- gcGGCUUGUGC--------GGGAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 6601 0.68 0.717388
Target:  5'- aGCCGAugACGCgCUggcCACuCUGCAa- -3'
miRNA:   3'- gCGGCUugUGCGgGAa--GUG-GAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 7251 0.66 0.858812
Target:  5'- gGCCauccacGACGCGgCCgucCACCUcgGCGCCg -3'
miRNA:   3'- gCGGc-----UUGUGCgGGaa-GUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 7579 0.75 0.340923
Target:  5'- gGCCGGGgAgGCCgUgauggCACCUACGCCc -3'
miRNA:   3'- gCGGCUUgUgCGGgAa----GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 7881 0.72 0.516084
Target:  5'- uCGUCGu-CAaGCUCUUCGCCUACGCa -3'
miRNA:   3'- -GCGGCuuGUgCGGGAAGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 8040 0.77 0.260988
Target:  5'- gGCCGAACACGCCCggguggaGgCUACgGCCg -3'
miRNA:   3'- gCGGCUUGUGCGGGaag----UgGAUG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 9077 0.68 0.75832
Target:  5'- uCGCUGAAgUAUGgCCgcgucgUCACCgGCGCCg -3'
miRNA:   3'- -GCGGCUU-GUGCgGGa-----AGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 9507 0.68 0.768273
Target:  5'- gCGCCGAAgaGCGCCUcg-GCCUGCugguguACCg -3'
miRNA:   3'- -GCGGCUUg-UGCGGGaagUGGAUG------UGG- -5'
18383 5' -54.5 NC_004681.1 + 9664 0.66 0.850635
Target:  5'- gGCCGGGuCACcucgGCCCccUCAUUUACACg -3'
miRNA:   3'- gCGGCUU-GUG----CGGGa-AGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 9751 0.68 0.756314
Target:  5'- cCGCUGAuCAUcCCCgcgguccacucCGCCUACGCCa -3'
miRNA:   3'- -GCGGCUuGUGcGGGaa---------GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 10287 0.66 0.850635
Target:  5'- aGCUGAucgACGuCGCCaUUCGCCUcGCGCg -3'
miRNA:   3'- gCGGCU---UGU-GCGGgAAGUGGA-UGUGg -5'
18383 5' -54.5 NC_004681.1 + 12343 1.13 0.001115
Target:  5'- uCGCCGAACACGCCCUUCACCUACACCg -3'
miRNA:   3'- -GCGGCUUGUGCGGGAAGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 12972 0.66 0.858812
Target:  5'- gGCCuGAcguCGCGCUCacCGgCUACACCg -3'
miRNA:   3'- gCGG-CUu--GUGCGGGaaGUgGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 13290 0.66 0.833635
Target:  5'- aGuCCGAGgGCGCCCUgucgaGCCUggagaucgAgGCCg -3'
miRNA:   3'- gC-GGCUUgUGCGGGAag---UGGA--------UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 13713 0.67 0.778092
Target:  5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3'
miRNA:   3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.