miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 14465 0.7 0.621599
Target:  5'- aCGCCGcGCGCGCC----GCCUcCGCCg -3'
miRNA:   3'- -GCGGCuUGUGCGGgaagUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 14564 0.69 0.664496
Target:  5'- cCGCCac-CACGgCCgcagUCGCCUucgGCACCg -3'
miRNA:   3'- -GCGGcuuGUGCgGGa---AGUGGA---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 14774 0.69 0.696399
Target:  5'- aCGCCGcGgACGCCCUggcCAuCCUgaaggcugGCGCCc -3'
miRNA:   3'- -GCGGCuUgUGCGGGAa--GU-GGA--------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 15361 0.66 0.824828
Target:  5'- cCGCCGAGgGuaaGgCgUUCGCCgACGCCa -3'
miRNA:   3'- -GCGGCUUgUg--CgGgAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 15653 0.68 0.75832
Target:  5'- uGCCGAucaccuCGCGCUCagCACCaGCAgCCu -3'
miRNA:   3'- gCGGCUu-----GUGCGGGaaGUGGaUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 15682 0.77 0.281157
Target:  5'- aCGUCGAGCACGCCUcggaggUCAUggACACCu -3'
miRNA:   3'- -GCGGCUUGUGCGGGa-----AGUGgaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 16217 0.71 0.600166
Target:  5'- uGCCGGAUgucgaGCGCCCUggugaCGCCaucCGCCu -3'
miRNA:   3'- gCGGCUUG-----UGCGGGAa----GUGGau-GUGG- -5'
18383 5' -54.5 NC_004681.1 + 17675 0.69 0.706928
Target:  5'- cCGCCGcAGaccuucUugGCCUcagUCACCUGCugCu -3'
miRNA:   3'- -GCGGC-UU------GugCGGGa--AGUGGAUGugG- -5'
18383 5' -54.5 NC_004681.1 + 18438 0.66 0.848973
Target:  5'- uCGCgGAGCGCGCUgagauguuCCUGCGCUc -3'
miRNA:   3'- -GCGgCUUGUGCGGgaagu---GGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 19058 0.66 0.858812
Target:  5'- cCGCCGAGCuCGa-CUUCACUgucgagGCAUCc -3'
miRNA:   3'- -GCGGCUUGuGCggGAAGUGGa-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 19244 0.71 0.589484
Target:  5'- aCGuCCGcAGCaaGCGCCagguCUUCACCUGgACCg -3'
miRNA:   3'- -GC-GGC-UUG--UGCGG----GAAGUGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 19492 0.68 0.748245
Target:  5'- cCGCuUGAAgGCGCgCUgCACCUuggACGCCu -3'
miRNA:   3'- -GCG-GCUUgUGCGgGAaGUGGA---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 21112 0.67 0.797288
Target:  5'- cCGCUGGACACGCUCaugaCGCCcAUugUg -3'
miRNA:   3'- -GCGGCUUGUGCGGGaa--GUGGaUGugG- -5'
18383 5' -54.5 NC_004681.1 + 21357 0.66 0.84224
Target:  5'- uGCgGAuCAC-CUCUUCGCCgACACUg -3'
miRNA:   3'- gCGgCUuGUGcGGGAAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22083 0.69 0.68581
Target:  5'- uGuuGAACGgGUUCUUCACUgcgGCACUc -3'
miRNA:   3'- gCggCUUGUgCGGGAAGUGGa--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22411 0.66 0.858812
Target:  5'- gGCCGcGgACGgcaaCCCUcCGCaCUACACCc -3'
miRNA:   3'- gCGGCuUgUGC----GGGAaGUG-GAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 22641 0.66 0.84224
Target:  5'- gCGCCGcGCGCaaGCagaUCGCCUACGuCCg -3'
miRNA:   3'- -GCGGCuUGUG--CGggaAGUGGAUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 23411 0.67 0.797288
Target:  5'- -aCCGAcaACACGCUgUUCACCgucgACcucgGCCa -3'
miRNA:   3'- gcGGCU--UGUGCGGgAAGUGGa---UG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 28331 0.7 0.65379
Target:  5'- aCGCagaCGAACgAUGUCCUcgUCACCccgGCGCCg -3'
miRNA:   3'- -GCG---GCUUG-UGCGGGA--AGUGGa--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 28648 0.67 0.806645
Target:  5'- uGgCGAACuuGCCCgccacCACCUugGCg -3'
miRNA:   3'- gCgGCUUGugCGGGaa---GUGGAugUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.