miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 29072 0.71 0.600166
Target:  5'- aCGCCGuGCGCGCgCagCGCCgguccCACCa -3'
miRNA:   3'- -GCGGCuUGUGCGgGaaGUGGau---GUGG- -5'
18383 5' -54.5 NC_004681.1 + 29497 0.66 0.84224
Target:  5'- gGCCGAugAUGCCCa--GCUUcCACa -3'
miRNA:   3'- gCGGCUugUGCGGGaagUGGAuGUGg -5'
18383 5' -54.5 NC_004681.1 + 31168 0.71 0.589484
Target:  5'- cCGUCGAGgAgggUGUCCUUgGCCUGCACg -3'
miRNA:   3'- -GCGGCUUgU---GCGGGAAgUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 31413 0.7 0.632333
Target:  5'- aCGCUGGGCGCGCgCgUC-CC-ACACCc -3'
miRNA:   3'- -GCGGCUUGUGCGgGaAGuGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33297 0.66 0.858812
Target:  5'- aCGCCGGuCGCGCCgCgguguaCGCCgggacguuCGCCg -3'
miRNA:   3'- -GCGGCUuGUGCGG-Gaa----GUGGau------GUGG- -5'
18383 5' -54.5 NC_004681.1 + 33378 0.72 0.526374
Target:  5'- gCGUCGcGCGCGCCgUguggCACCUGaACCg -3'
miRNA:   3'- -GCGGCuUGUGCGGgAa---GUGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 33548 0.67 0.797288
Target:  5'- -cCCGAGCugGgCCUUCuuccagGCCgugaagGCGCCu -3'
miRNA:   3'- gcGGCUUGugCgGGAAG------UGGa-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33756 0.71 0.578837
Target:  5'- gGCCGAGCGCGgCUgggaGCUUccGCACCa -3'
miRNA:   3'- gCGGCUUGUGCgGGaag-UGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 35914 0.68 0.738057
Target:  5'- cCGCCcGAUACG-CCUUCGCau-CGCCg -3'
miRNA:   3'- -GCGGcUUGUGCgGGAAGUGgauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 37798 0.67 0.806645
Target:  5'- gGCCGGAUG-GCCCUcgGCCUACGu- -3'
miRNA:   3'- gCGGCUUGUgCGGGAagUGGAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 38220 0.73 0.437137
Target:  5'- gGCCGAAgACGuCCCgcggcggCGCCauagGCACCg -3'
miRNA:   3'- gCGGCUUgUGC-GGGaa-----GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39083 0.76 0.317484
Target:  5'- gCGCCGuGCAaGCCCUgguggcCACCUGCGCg -3'
miRNA:   3'- -GCGGCuUGUgCGGGAa-----GUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 39203 0.68 0.734981
Target:  5'- aCGUCGAGgACGUcagCCUggucgacugucagcUCACCgUGCGCCg -3'
miRNA:   3'- -GCGGCUUgUGCG---GGA--------------AGUGG-AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39769 0.67 0.815829
Target:  5'- gCGCUGAugACGUUC-UCG-CUGCACUg -3'
miRNA:   3'- -GCGGCUugUGCGGGaAGUgGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39786 0.67 0.797288
Target:  5'- cCGCC--GCGCGaCCaUCGCCUcccACGCCu -3'
miRNA:   3'- -GCGGcuUGUGCgGGaAGUGGA---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 40050 0.67 0.778092
Target:  5'- aGCCGAucccGCAgGCCga-CGCCaGCACCc -3'
miRNA:   3'- gCGGCU----UGUgCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 41112 0.69 0.684748
Target:  5'- gGCCGaAGCGCGCgggaauucccaagCCcgCACCgaagGCGCCg -3'
miRNA:   3'- gCGGC-UUGUGCG-------------GGaaGUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 42245 0.68 0.717388
Target:  5'- cCGCCGAGCugcugguccCGCCCgcggaaggCGCCUuCACg -3'
miRNA:   3'- -GCGGCUUGu--------GCGGGaa------GUGGAuGUGg -5'
18383 5' -54.5 NC_004681.1 + 42602 0.68 0.738057
Target:  5'- uGCgCGAugAUGCCCUUgucgUugCUuaGCGCCu -3'
miRNA:   3'- gCG-GCUugUGCGGGAA----GugGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 42896 0.7 0.621599
Target:  5'- cCGCCGAugAaGUCCUUCAgCgAUGCCg -3'
miRNA:   3'- -GCGGCUugUgCGGGAAGUgGaUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.