miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 42946 0.69 0.664496
Target:  5'- gCGCCGAAC-CGUUCgagggUCACCUcucggacaaccuGCGCUa -3'
miRNA:   3'- -GCGGCUUGuGCGGGa----AGUGGA------------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 43330 0.67 0.797288
Target:  5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3'
miRNA:   3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 43678 0.68 0.7452
Target:  5'- cCGCCGAucaaccccuccaacACAC-CCCgcCGCCgcagUACACCg -3'
miRNA:   3'- -GCGGCU--------------UGUGcGGGaaGUGG----AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 43985 0.68 0.717388
Target:  5'- gGCCGAGgACGUCaaaCAUCcGCACCa -3'
miRNA:   3'- gCGGCUUgUGCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 44140 0.66 0.824828
Target:  5'- cCGCgGGcCugGCCC-UCACCg--GCCg -3'
miRNA:   3'- -GCGgCUuGugCGGGaAGUGGaugUGG- -5'
18383 5' -54.5 NC_004681.1 + 44814 0.66 0.866764
Target:  5'- cCGCUGucCGCGUUg--CGCUUGCACCa -3'
miRNA:   3'- -GCGGCuuGUGCGGgaaGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 45113 0.67 0.815829
Target:  5'- cCGUCGAGCuCGCCCcacaugugggagUUCGCac-CGCCa -3'
miRNA:   3'- -GCGGCUUGuGCGGG------------AAGUGgauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 45122 0.67 0.806645
Target:  5'- aCGCCGu-CGCGCagguCUaCACCUACaacgACCg -3'
miRNA:   3'- -GCGGCuuGUGCGg---GAaGUGGAUG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 45251 0.72 0.53674
Target:  5'- gGCagCGAAC-CGCCUUggCGCUUGCGCCg -3'
miRNA:   3'- gCG--GCUUGuGCGGGAa-GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 45831 0.7 0.650575
Target:  5'- aCGCCuGAugGCgucacucaugacgaGCCCaUCAUUUGCGCCg -3'
miRNA:   3'- -GCGG-CUugUG--------------CGGGaAGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 46127 0.75 0.374081
Target:  5'- aGCUGcGCGCGgCCggUCgACCUACGCCa -3'
miRNA:   3'- gCGGCuUGUGCgGGa-AG-UGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 47057 0.68 0.717388
Target:  5'- uGCaCGAGCGCGCaCCc-CGCCaggaACGCCg -3'
miRNA:   3'- gCG-GCUUGUGCG-GGaaGUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 47789 0.66 0.858812
Target:  5'- cCGCCucGAC-CGCCag-CGCCaGCGCCg -3'
miRNA:   3'- -GCGGc-UUGuGCGGgaaGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 48034 0.71 0.554519
Target:  5'- gCGCCGc-CGCGCCCaucuccagaagugagCACCUuaGCGCCg -3'
miRNA:   3'- -GCGGCuuGUGCGGGaa-------------GUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 48139 0.71 0.566116
Target:  5'- gGCC---CGCGCCCUUCACUacgugaagaaggGCACCa -3'
miRNA:   3'- gCGGcuuGUGCGGGAAGUGGa-----------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 48216 0.7 0.621599
Target:  5'- gCGCCuacaAGCugGCCC-UCGCCgaggcuCGCCa -3'
miRNA:   3'- -GCGGc---UUGugCGGGaAGUGGau----GUGG- -5'
18383 5' -54.5 NC_004681.1 + 49071 0.69 0.705878
Target:  5'- aGCCcgguaaugggaguGGACACGCCCUUguaGCCgaggUugGCCg -3'
miRNA:   3'- gCGG-------------CUUGUGCGGGAAg--UGG----AugUGG- -5'
18383 5' -54.5 NC_004681.1 + 50052 0.66 0.864403
Target:  5'- uCGCCGAgccgauccgaaaguGCAUGUCCggggUCAgCggcACGCCc -3'
miRNA:   3'- -GCGGCU--------------UGUGCGGGa---AGUgGa--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50456 0.66 0.866764
Target:  5'- aCGUCGuggGCgACGCCCaccccgaccgUguCCUGCGCCa -3'
miRNA:   3'- -GCGGCu--UG-UGCGGGa---------AguGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50777 0.68 0.748245
Target:  5'- uGCCGcccGCGcCGCCCUcugcggUCACCguguuguCGCCa -3'
miRNA:   3'- gCGGCu--UGU-GCGGGA------AGUGGau-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.