miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 75336 0.68 0.747231
Target:  5'- gGCCGggUccagcuugACGCCCagCAUCUcggccagGCGCCu -3'
miRNA:   3'- gCGGCuuG--------UGCGGGaaGUGGA-------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 75245 0.74 0.400345
Target:  5'- gCGUCGAugGCGCCCUgaaggaacUCGCCUggggauGCgGCCg -3'
miRNA:   3'- -GCGGCUugUGCGGGA--------AGUGGA------UG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 74297 0.66 0.866764
Target:  5'- aGCUGAagGCugGCCCggUCACCaggggugAguCCg -3'
miRNA:   3'- gCGGCU--UGugCGGGa-AGUGGa------UguGG- -5'
18383 5' -54.5 NC_004681.1 + 71343 0.68 0.727768
Target:  5'- aGUCGAGCAcauCGCCCUcagUgACCUucaACCa -3'
miRNA:   3'- gCGGCUUGU---GCGGGA---AgUGGAug-UGG- -5'
18383 5' -54.5 NC_004681.1 + 70853 0.67 0.806645
Target:  5'- gGCCGcAGCAUGCCCUcagccauccUUGCgUugACUg -3'
miRNA:   3'- gCGGC-UUGUGCGGGA---------AGUGgAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 70470 0.67 0.787767
Target:  5'- cCGCUgguGAACAUGCaCUUCACCgggagGCguGCCa -3'
miRNA:   3'- -GCGG---CUUGUGCGgGAAGUGGa----UG--UGG- -5'
18383 5' -54.5 NC_004681.1 + 69748 0.68 0.738057
Target:  5'- uCGCgguaGAACGCGCg---CAUCUGCGCCg -3'
miRNA:   3'- -GCGg---CUUGUGCGggaaGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 69251 0.66 0.833635
Target:  5'- gGCCcAugGCGCCCUUgACg-GCGCg -3'
miRNA:   3'- gCGGcUugUGCGGGAAgUGgaUGUGg -5'
18383 5' -54.5 NC_004681.1 + 69114 0.72 0.505876
Target:  5'- gCGCCGccucgccCGCGCCCUggccucccUCGCCUaccggcucggcuACACCa -3'
miRNA:   3'- -GCGGCuu-----GUGCGGGA--------AGUGGA------------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 68513 0.67 0.806645
Target:  5'- gGCuCGcGGCACGCCUgggCGCC-AUGCCg -3'
miRNA:   3'- gCG-GC-UUGUGCGGGaa-GUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66783 0.75 0.382705
Target:  5'- aCGCUGAGCACuCCCUggACCccgagUACGCCa -3'
miRNA:   3'- -GCGGCUUGUGcGGGAagUGG-----AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66757 0.66 0.858812
Target:  5'- gGCCGGugGCaACGCC----GCCUACAUCg -3'
miRNA:   3'- gCGGCU--UG-UGCGGgaagUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66330 0.66 0.84224
Target:  5'- gGCCGAG-GCGCUCUUCGgCgcGCACg -3'
miRNA:   3'- gCGGCUUgUGCGGGAAGUgGa-UGUGg -5'
18383 5' -54.5 NC_004681.1 + 65161 0.68 0.748245
Target:  5'- cCGCCuuGCACGCgacggCCgcgggCACCggggGCGCCa -3'
miRNA:   3'- -GCGGcuUGUGCG-----GGaa---GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 64817 0.69 0.706928
Target:  5'- cCGCCuccgaGGGCAC-CCCgugggacuggUACCUGCGCCg -3'
miRNA:   3'- -GCGG-----CUUGUGcGGGaa--------GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 64486 0.66 0.84224
Target:  5'- uCGCCGGuccauuccuGguCGCCggUCACCUgacgaACACCc -3'
miRNA:   3'- -GCGGCU---------UguGCGGgaAGUGGA-----UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 63850 0.66 0.850635
Target:  5'- -uCCGGGCGgGCCUU--GCCUcGCGCCg -3'
miRNA:   3'- gcGGCUUGUgCGGGAagUGGA-UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 63414 0.69 0.68581
Target:  5'- uCGCCGucCuCGUCCgUCACCggcuCACCg -3'
miRNA:   3'- -GCGGCuuGuGCGGGaAGUGGau--GUGG- -5'
18383 5' -54.5 NC_004681.1 + 62777 0.73 0.465969
Target:  5'- cCGCCGAGUugGCUa-UCGCCaACGCCa -3'
miRNA:   3'- -GCGGCUUGugCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 62423 0.67 0.815829
Target:  5'- gCGCCG-ACAcCGCCC-UCuCCgcCGCCc -3'
miRNA:   3'- -GCGGCuUGU-GCGGGaAGuGGauGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.