miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 61681 0.78 0.242014
Target:  5'- uGCCGAAgAUGCCCUgCACCUuCugCa -3'
miRNA:   3'- gCGGCUUgUGCGGGAaGUGGAuGugG- -5'
18383 5' -54.5 NC_004681.1 + 61377 0.67 0.778092
Target:  5'- gCGgCGcGCGCGgCgUUCGCCUcCGCCu -3'
miRNA:   3'- -GCgGCuUGUGCgGgAAGUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 60700 0.68 0.717388
Target:  5'- gGCCGucucgaugagGAUGCGaCCCcgcgugaCACCUACGCCg -3'
miRNA:   3'- gCGGC----------UUGUGC-GGGaa-----GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 59621 0.76 0.32516
Target:  5'- cCGCCGAAgGCgugGCCgUUCugCUugGCCu -3'
miRNA:   3'- -GCGGCUUgUG---CGGgAAGugGAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 59558 0.66 0.850635
Target:  5'- aGCUGGua--GCCCUgCGCCUGgucCACCg -3'
miRNA:   3'- gCGGCUugugCGGGAaGUGGAU---GUGG- -5'
18383 5' -54.5 NC_004681.1 + 59458 0.7 0.610874
Target:  5'- gGCCGAgGCaacccacuugGCGCCCUcgUCGCCaccCACCg -3'
miRNA:   3'- gCGGCU-UG----------UGCGGGA--AGUGGau-GUGG- -5'
18383 5' -54.5 NC_004681.1 + 59154 0.71 0.600166
Target:  5'- gGCCGGugcucggaGCGCCg-UCGCCaGCACCa -3'
miRNA:   3'- gCGGCUug------UGCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 58789 0.7 0.632333
Target:  5'- cCGUCGAggcGCGCGCCCaggagUugCUGgGCCu -3'
miRNA:   3'- -GCGGCU---UGUGCGGGaa---GugGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 58532 0.7 0.643066
Target:  5'- gGCCGAGCGCgacaaucauGCCCaggagACCUGgGCCa -3'
miRNA:   3'- gCGGCUUGUG---------CGGGaag--UGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 58228 0.7 0.65379
Target:  5'- gGUCGucCGCGCCCgagcCGCCgAUACCa -3'
miRNA:   3'- gCGGCuuGUGCGGGaa--GUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 57885 0.71 0.600166
Target:  5'- gGCCcaccgGAGC-CGCCCUcggcacUCACCUGCggggACCg -3'
miRNA:   3'- gCGG-----CUUGuGCGGGA------AGUGGAUG----UGG- -5'
18383 5' -54.5 NC_004681.1 + 56235 0.73 0.475797
Target:  5'- aCGCCGcAGCGCGCCCagaGCUcgUugACCg -3'
miRNA:   3'- -GCGGC-UUGUGCGGGaagUGG--AugUGG- -5'
18383 5' -54.5 NC_004681.1 + 56013 0.66 0.858812
Target:  5'- aCGCCaagGAGgGCGaCCUccgcaUCGCCUuCACCg -3'
miRNA:   3'- -GCGG---CUUgUGCgGGA-----AGUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 55912 0.69 0.706928
Target:  5'- uGuuGAGCAgGCCCgcggUgGCCUucAUGCCg -3'
miRNA:   3'- gCggCUUGUgCGGGa---AgUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 54273 0.69 0.68581
Target:  5'- cCGCCGAagaggcGCugGUCC-UCGCC--CACCu -3'
miRNA:   3'- -GCGGCU------UGugCGGGaAGUGGauGUGG- -5'
18383 5' -54.5 NC_004681.1 + 52628 0.73 0.453351
Target:  5'- cCGCCGAACACGCCCUcCAggaaguugagcaacCCUgagaggucgAUGCCc -3'
miRNA:   3'- -GCGGCUUGUGCGGGAaGU--------------GGA---------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 51880 0.67 0.806645
Target:  5'- gGUCGGcgaacguguugGCACGCCCgau-CCgGCGCCg -3'
miRNA:   3'- gCGGCU-----------UGUGCGGGaaguGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 51663 0.66 0.845624
Target:  5'- aCGCCGAguaggucccaggagaACAgGCCCUUgGCg-GCGuCCg -3'
miRNA:   3'- -GCGGCU---------------UGUgCGGGAAgUGgaUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 51403 0.67 0.806645
Target:  5'- aGCaGAACGUGCCCUcCGCgCUcaACGCCa -3'
miRNA:   3'- gCGgCUUGUGCGGGAaGUG-GA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50992 0.66 0.850635
Target:  5'- gGCCGc---CGCCCgcgcCGCCgACGCCg -3'
miRNA:   3'- gCGGCuuguGCGGGaa--GUGGaUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.