miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 28331 0.7 0.65379
Target:  5'- aCGCagaCGAACgAUGUCCUcgUCACCccgGCGCCg -3'
miRNA:   3'- -GCG---GCUUG-UGCGGGA--AGUGGa--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33756 0.71 0.578837
Target:  5'- gGCCGAGCGCGgCUgggaGCUUccGCACCa -3'
miRNA:   3'- gCGGCUUGUGCgGGaag-UGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 19244 0.71 0.589484
Target:  5'- aCGuCCGcAGCaaGCGCCagguCUUCACCUGgACCg -3'
miRNA:   3'- -GC-GGC-UUG--UGCGG----GAAGUGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 2723 0.71 0.589484
Target:  5'- gCGCCGAACucguCGCCUccgaccaUCACCUguGgGCCg -3'
miRNA:   3'- -GCGGCUUGu---GCGGGa------AGUGGA--UgUGG- -5'
18383 5' -54.5 NC_004681.1 + 48216 0.7 0.621599
Target:  5'- gCGCCuacaAGCugGCCC-UCGCCgaggcuCGCCa -3'
miRNA:   3'- -GCGGc---UUGugCGGGaAGUGGau----GUGG- -5'
18383 5' -54.5 NC_004681.1 + 14465 0.7 0.621599
Target:  5'- aCGCCGcGCGCGCC----GCCUcCGCCg -3'
miRNA:   3'- -GCGGCuUGUGCGGgaagUGGAuGUGG- -5'
18383 5' -54.5 NC_004681.1 + 58789 0.7 0.632333
Target:  5'- cCGUCGAggcGCGCGCCCaggagUugCUGgGCCu -3'
miRNA:   3'- -GCGGCU---UGUGCGGGaa---GugGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 58532 0.7 0.643066
Target:  5'- gGCCGAGCGCgacaaucauGCCCaggagACCUGgGCCa -3'
miRNA:   3'- gCGGCUUGUG---------CGGGaag--UGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 45831 0.7 0.650575
Target:  5'- aCGCCuGAugGCgucacucaugacgaGCCCaUCAUUUGCGCCg -3'
miRNA:   3'- -GCGG-CUugUG--------------CGGGaAGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 48139 0.71 0.566116
Target:  5'- gGCC---CGCGCCCUUCACUacgugaagaaggGCACCa -3'
miRNA:   3'- gCGGcuuGUGCGGGAAGUGGa-----------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 33378 0.72 0.526374
Target:  5'- gCGUCGcGCGCGCCgUguggCACCUGaACCg -3'
miRNA:   3'- -GCGGCuUGUGCGGgAa---GUGGAUgUGG- -5'
18383 5' -54.5 NC_004681.1 + 69114 0.72 0.505876
Target:  5'- gCGCCGccucgccCGCGCCCUggccucccUCGCCUaccggcucggcuACACCa -3'
miRNA:   3'- -GCGGCuu-----GUGCGGGA--------AGUGGA------------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 3193 0.82 0.139407
Target:  5'- gGCCGAACACGCCUcgugucgagUUCugCaACACCa -3'
miRNA:   3'- gCGGCUUGUGCGGG---------AAGugGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 15682 0.77 0.281157
Target:  5'- aCGUCGAGCACGCCUcggaggUCAUggACACCu -3'
miRNA:   3'- -GCGGCUUGUGCGGGa-----AGUGgaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 39083 0.76 0.317484
Target:  5'- gCGCCGuGCAaGCCCUgguggcCACCUGCGCg -3'
miRNA:   3'- -GCGGCuUGUgCGGGAa-----GUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 7579 0.75 0.340923
Target:  5'- gGCCGGGgAgGCCgUgauggCACCUACGCCc -3'
miRNA:   3'- gCGGCUUgUgCGGgAa----GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 66783 0.75 0.382705
Target:  5'- aCGCUGAGCACuCCCUggACCccgagUACGCCa -3'
miRNA:   3'- -GCGGCUUGUGcGGGAagUGG-----AUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 38220 0.73 0.437137
Target:  5'- gGCCGAAgACGuCCCgcggcggCGCCauagGCACCg -3'
miRNA:   3'- gCGGCUUgUGC-GGGaa-----GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 62777 0.73 0.465969
Target:  5'- cCGCCGAGUugGCUa-UCGCCaACGCCa -3'
miRNA:   3'- -GCGGCUUGugCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 50937 0.72 0.505876
Target:  5'- uCGUCGGucACGCGCUggccaaguucggCUaCACCUACGCCg -3'
miRNA:   3'- -GCGGCU--UGUGCGG------------GAaGUGGAUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.