miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 61681 0.78 0.242014
Target:  5'- uGCCGAAgAUGCCCUgCACCUuCugCa -3'
miRNA:   3'- gCGGCUUgUGCGGGAaGUGGAuGugG- -5'
18383 5' -54.5 NC_004681.1 + 2836 0.7 0.632333
Target:  5'- gCGCaGAGCACGCgCCaaUCGCCUACgagacuucuACCg -3'
miRNA:   3'- -GCGgCUUGUGCG-GGa-AGUGGAUG---------UGG- -5'
18383 5' -54.5 NC_004681.1 + 58228 0.7 0.65379
Target:  5'- gGUCGucCGCGCCCgagcCGCCgAUACCa -3'
miRNA:   3'- gCGGCuuGUGCGGGaa--GUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 44814 0.66 0.866764
Target:  5'- cCGCUGucCGCGUUg--CGCUUGCACCa -3'
miRNA:   3'- -GCGGCuuGUGCGGgaaGUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 75245 0.74 0.400345
Target:  5'- gCGUCGAugGCGCCCUgaaggaacUCGCCUggggauGCgGCCg -3'
miRNA:   3'- -GCGGCUugUGCGGGA--------AGUGGA------UG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 52628 0.73 0.453351
Target:  5'- cCGCCGAACACGCCCUcCAggaaguugagcaacCCUgagaggucgAUGCCc -3'
miRNA:   3'- -GCGGCUUGUGCGGGAaGU--------------GGA---------UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 7881 0.72 0.516084
Target:  5'- uCGUCGu-CAaGCUCUUCGCCUACGCa -3'
miRNA:   3'- -GCGGCuuGUgCGGGAAGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 45251 0.72 0.53674
Target:  5'- gGCagCGAAC-CGCCUUggCGCUUGCGCCg -3'
miRNA:   3'- gCG--GCUUGuGCGGGAa-GUGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 16217 0.71 0.600166
Target:  5'- uGCCGGAUgucgaGCGCCCUggugaCGCCaucCGCCu -3'
miRNA:   3'- gCGGCUUG-----UGCGGGAa----GUGGau-GUGG- -5'
18383 5' -54.5 NC_004681.1 + 42896 0.7 0.621599
Target:  5'- cCGCCGAugAaGUCCUUCAgCgAUGCCg -3'
miRNA:   3'- -GCGGCUugUgCGGGAAGUgGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 29072 0.71 0.600166
Target:  5'- aCGCCGuGCGCGCgCagCGCCgguccCACCa -3'
miRNA:   3'- -GCGGCuUGUGCGgGaaGUGGau---GUGG- -5'
18383 5' -54.5 NC_004681.1 + 31168 0.71 0.589484
Target:  5'- cCGUCGAGgAgggUGUCCUUgGCCUGCACg -3'
miRNA:   3'- -GCGGCUUgU---GCGGGAAgUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 8040 0.77 0.260988
Target:  5'- gGCCGAACACGCCCggguggaGgCUACgGCCg -3'
miRNA:   3'- gCGGCUUGUGCGGGaag----UgGAUG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 59154 0.71 0.600166
Target:  5'- gGCCGGugcucggaGCGCCg-UCGCCaGCACCa -3'
miRNA:   3'- gCGGCUug------UGCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 59621 0.76 0.32516
Target:  5'- cCGCCGAAgGCgugGCCgUUCugCUugGCCu -3'
miRNA:   3'- -GCGGCUUgUG---CGGgAAGugGAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 48034 0.71 0.554519
Target:  5'- gCGCCGc-CGCGCCCaucuccagaagugagCACCUuaGCGCCg -3'
miRNA:   3'- -GCGGCuuGUGCGGGaa-------------GUGGA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 59458 0.7 0.610874
Target:  5'- gGCCGAgGCaacccacuugGCGCCCUcgUCGCCaccCACCg -3'
miRNA:   3'- gCGGCU-UG----------UGCGGGA--AGUGGau-GUGG- -5'
18383 5' -54.5 NC_004681.1 + 31413 0.7 0.632333
Target:  5'- aCGCUGGGCGCGCgCgUC-CC-ACACCc -3'
miRNA:   3'- -GCGGCUUGUGCGgGaAGuGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 46127 0.75 0.374081
Target:  5'- aGCUGcGCGCGgCCggUCgACCUACGCCa -3'
miRNA:   3'- gCGGCuUGUGCgGGa-AG-UGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 56235 0.73 0.475797
Target:  5'- aCGCCGcAGCGCGCCCagaGCUcgUugACCg -3'
miRNA:   3'- -GCGGC-UUGUGCGGGaagUGG--AugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.