miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18383 5' -54.5 NC_004681.1 + 63414 0.69 0.68581
Target:  5'- uCGCCGucCuCGUCCgUCACCggcuCACCg -3'
miRNA:   3'- -GCGGCuuGuGCGGGaAGUGGau--GUGG- -5'
18383 5' -54.5 NC_004681.1 + 58228 0.7 0.65379
Target:  5'- gGUCGucCGCGCCCgagcCGCCgAUACCa -3'
miRNA:   3'- gCGGCuuGUGCGGGaa--GUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 31168 0.71 0.589484
Target:  5'- cCGUCGAGgAgggUGUCCUUgGCCUGCACg -3'
miRNA:   3'- -GCGGCUUgU---GCGGGAAgUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 46127 0.75 0.374081
Target:  5'- aGCUGcGCGCGgCCggUCgACCUACGCCa -3'
miRNA:   3'- gCGGCuUGUGCgGGa-AG-UGGAUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 15653 0.68 0.75832
Target:  5'- uGCCGAucaccuCGCGCUCagCACCaGCAgCCu -3'
miRNA:   3'- gCGGCUu-----GUGCGGGaaGUGGaUGU-GG- -5'
18383 5' -54.5 NC_004681.1 + 71343 0.68 0.727768
Target:  5'- aGUCGAGCAcauCGCCCUcagUgACCUucaACCa -3'
miRNA:   3'- gCGGCUUGU---GCGGGA---AgUGGAug-UGG- -5'
18383 5' -54.5 NC_004681.1 + 2836 0.7 0.632333
Target:  5'- gCGCaGAGCACGCgCCaaUCGCCUACgagacuucuACCg -3'
miRNA:   3'- -GCGgCUUGUGCG-GGa-AGUGGAUG---------UGG- -5'
18383 5' -54.5 NC_004681.1 + 59621 0.76 0.32516
Target:  5'- cCGCCGAAgGCgugGCCgUUCugCUugGCCu -3'
miRNA:   3'- -GCGGCUUgUG---CGGgAAGugGAugUGG- -5'
18383 5' -54.5 NC_004681.1 + 6601 0.68 0.717388
Target:  5'- aGCCGAugACGCgCUggcCACuCUGCAa- -3'
miRNA:   3'- gCGGCUugUGCGgGAa--GUG-GAUGUgg -5'
18383 5' -54.5 NC_004681.1 + 8040 0.77 0.260988
Target:  5'- gGCCGAACACGCCCggguggaGgCUACgGCCg -3'
miRNA:   3'- gCGGCUUGUGCGGGaag----UgGAUG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 31413 0.7 0.632333
Target:  5'- aCGCUGGGCGCGCgCgUC-CC-ACACCc -3'
miRNA:   3'- -GCGGCUUGUGCGgGaAGuGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 49071 0.69 0.705878
Target:  5'- aGCCcgguaaugggaguGGACACGCCCUUguaGCCgaggUugGCCg -3'
miRNA:   3'- gCGG-------------CUUGUGCGGGAAg--UGG----AugUGG- -5'
18383 5' -54.5 NC_004681.1 + 59154 0.71 0.600166
Target:  5'- gGCCGGugcucggaGCGCCg-UCGCCaGCACCa -3'
miRNA:   3'- gCGGCUug------UGCGGgaAGUGGaUGUGG- -5'
18383 5' -54.5 NC_004681.1 + 16217 0.71 0.600166
Target:  5'- uGCCGGAUgucgaGCGCCCUggugaCGCCaucCGCCu -3'
miRNA:   3'- gCGGCUUG-----UGCGGGAa----GUGGau-GUGG- -5'
18383 5' -54.5 NC_004681.1 + 7881 0.72 0.516084
Target:  5'- uCGUCGu-CAaGCUCUUCGCCUACGCa -3'
miRNA:   3'- -GCGGCuuGUgCGGGAAGUGGAUGUGg -5'
18383 5' -54.5 NC_004681.1 + 75245 0.74 0.400345
Target:  5'- gCGUCGAugGCGCCCUgaaggaacUCGCCUggggauGCgGCCg -3'
miRNA:   3'- -GCGGCUugUGCGGGA--------AGUGGA------UG-UGG- -5'
18383 5' -54.5 NC_004681.1 + 43330 0.67 0.797288
Target:  5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3'
miRNA:   3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 13713 0.67 0.778092
Target:  5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3'
miRNA:   3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5'
18383 5' -54.5 NC_004681.1 + 65161 0.68 0.748245
Target:  5'- cCGCCuuGCACGCgacggCCgcgggCACCggggGCGCCa -3'
miRNA:   3'- -GCGGcuUGUGCG-----GGaa---GUGGa---UGUGG- -5'
18383 5' -54.5 NC_004681.1 + 42602 0.68 0.738057
Target:  5'- uGCgCGAugAUGCCCUUgucgUugCUuaGCGCCu -3'
miRNA:   3'- gCG-GCUugUGCGGGAA----GugGA--UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.