Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18383 | 5' | -54.5 | NC_004681.1 | + | 59621 | 0.76 | 0.32516 |
Target: 5'- cCGCCGAAgGCgugGCCgUUCugCUugGCCu -3' miRNA: 3'- -GCGGCUUgUG---CGGgAAGugGAugUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19492 | 0.68 | 0.748245 |
Target: 5'- cCGCuUGAAgGCGCgCUgCACCUuggACGCCu -3' miRNA: 3'- -GCG-GCUUgUGCGgGAaGUGGA---UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 44814 | 0.66 | 0.866764 |
Target: 5'- cCGCUGucCGCGUUg--CGCUUGCACCa -3' miRNA: 3'- -GCGGCuuGUGCGGgaaGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 75245 | 0.74 | 0.400345 |
Target: 5'- gCGUCGAugGCGCCCUgaaggaacUCGCCUggggauGCgGCCg -3' miRNA: 3'- -GCGGCUugUGCGGGA--------AGUGGA------UG-UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 7881 | 0.72 | 0.516084 |
Target: 5'- uCGUCGu-CAaGCUCUUCGCCUACGCa -3' miRNA: 3'- -GCGGCuuGUgCGGGAAGUGGAUGUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 18438 | 0.66 | 0.848973 |
Target: 5'- uCGCgGAGCGCGCUgagauguuCCUGCGCUc -3' miRNA: 3'- -GCGgCUUGUGCGGgaagu---GGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 69251 | 0.66 | 0.833635 |
Target: 5'- gGCCcAugGCGCCCUUgACg-GCGCg -3' miRNA: 3'- gCGGcUugUGCGGGAAgUGgaUGUGg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 51880 | 0.67 | 0.806645 |
Target: 5'- gGUCGGcgaacguguugGCACGCCCgau-CCgGCGCCg -3' miRNA: 3'- gCGGCU-----------UGUGCGGGaaguGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 43330 | 0.67 | 0.797288 |
Target: 5'- gCGCgaucaGGACGuCGCCCgcgUCGCgCUucACGCCa -3' miRNA: 3'- -GCGg----CUUGU-GCGGGa--AGUG-GA--UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 13713 | 0.67 | 0.778092 |
Target: 5'- gGCCGAugAUGCGCUCgucCACCgACugCa -3' miRNA: 3'- gCGGCU--UGUGCGGGaa-GUGGaUGugG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 69748 | 0.68 | 0.738057 |
Target: 5'- uCGCgguaGAACGCGCg---CAUCUGCGCCg -3' miRNA: 3'- -GCGg---CUUGUGCGggaaGUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 6601 | 0.68 | 0.717388 |
Target: 5'- aGCCGAugACGCgCUggcCACuCUGCAa- -3' miRNA: 3'- gCGGCUugUGCGgGAa--GUG-GAUGUgg -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 63414 | 0.69 | 0.68581 |
Target: 5'- uCGCCGucCuCGUCCgUCACCggcuCACCg -3' miRNA: 3'- -GCGGCuuGuGCGGGaAGUGGau--GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 58228 | 0.7 | 0.65379 |
Target: 5'- gGUCGucCGCGCCCgagcCGCCgAUACCa -3' miRNA: 3'- gCGGCuuGUGCGGGaa--GUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 59154 | 0.71 | 0.600166 |
Target: 5'- gGCCGGugcucggaGCGCCg-UCGCCaGCACCa -3' miRNA: 3'- gCGGCUug------UGCGGgaAGUGGaUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 16217 | 0.71 | 0.600166 |
Target: 5'- uGCCGGAUgucgaGCGCCCUggugaCGCCaucCGCCu -3' miRNA: 3'- gCGGCUUG-----UGCGGGAa----GUGGau-GUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 8040 | 0.77 | 0.260988 |
Target: 5'- gGCCGAACACGCCCggguggaGgCUACgGCCg -3' miRNA: 3'- gCGGCUUGUGCGGGaag----UgGAUG-UGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 19058 | 0.66 | 0.858812 |
Target: 5'- cCGCCGAGCuCGa-CUUCACUgucgagGCAUCc -3' miRNA: 3'- -GCGGCUUGuGCggGAAGUGGa-----UGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 60700 | 0.68 | 0.717388 |
Target: 5'- gGCCGucucgaugagGAUGCGaCCCcgcgugaCACCUACGCCg -3' miRNA: 3'- gCGGC----------UUGUGC-GGGaa-----GUGGAUGUGG- -5' |
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18383 | 5' | -54.5 | NC_004681.1 | + | 39203 | 0.68 | 0.734981 |
Target: 5'- aCGUCGAGgACGUcagCCUggucgacugucagcUCACCgUGCGCCg -3' miRNA: 3'- -GCGGCUUgUGCG---GGA--------------AGUGG-AUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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