miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 15483 0.66 0.803396
Target:  5'- aCAGGGUG-CCGUucuGGAuGGCGuCGGCg -3'
miRNA:   3'- aGUUCCACuGGCG---CCUuCCGUcGUUG- -5'
18384 5' -55.1 NC_004681.1 + 18733 0.66 0.803396
Target:  5'- cCAAGGgcGACgGCGGcGAGGCcGCGc- -3'
miRNA:   3'- aGUUCCa-CUGgCGCC-UUCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 46941 0.66 0.803396
Target:  5'- aUCGGGGUGccggggcgguuGCCGCGG--GGCuGCGu- -3'
miRNA:   3'- -AGUUCCAC-----------UGGCGCCuuCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 27620 0.66 0.793844
Target:  5'- ---cGGUGGCgcugGCGGc-GGCGGCGGCu -3'
miRNA:   3'- aguuCCACUGg---CGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 25182 0.66 0.793844
Target:  5'- cCGAGGUG-CCGa-GGAGGCugAGCGAg -3'
miRNA:   3'- aGUUCCACuGGCgcCUUCCG--UCGUUg -5'
18384 5' -55.1 NC_004681.1 + 1005 0.66 0.793844
Target:  5'- cUCGAGGaUGGagGCGGAcgccaGGGCGGCuuCc -3'
miRNA:   3'- -AGUUCC-ACUggCGCCU-----UCCGUCGuuG- -5'
18384 5' -55.1 NC_004681.1 + 8633 0.66 0.793844
Target:  5'- -gAAGGgguucuggccgaUGGCCGCGG-GGGCGGUcuCa -3'
miRNA:   3'- agUUCC------------ACUGGCGCCuUCCGUCGuuG- -5'
18384 5' -55.1 NC_004681.1 + 61855 0.66 0.774254
Target:  5'- cCGAuGGcGGCCGCGGucuGGUGGCGcGCg -3'
miRNA:   3'- aGUU-CCaCUGGCGCCuu-CCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 27122 0.66 0.774254
Target:  5'- -gAAGGcGACCGCGu-AGGCGGUg-- -3'
miRNA:   3'- agUUCCaCUGGCGCcuUCCGUCGuug -5'
18384 5' -55.1 NC_004681.1 + 53238 0.66 0.774254
Target:  5'- --cGGGUGACUcaaCGGAAGGUAG-AACu -3'
miRNA:   3'- aguUCCACUGGc--GCCUUCCGUCgUUG- -5'
18384 5' -55.1 NC_004681.1 + 63266 0.66 0.774254
Target:  5'- aUCAGGGUGucgaGCgGgGGAAGG-GGCGAg -3'
miRNA:   3'- -AGUUCCAC----UGgCgCCUUCCgUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 43902 0.66 0.774254
Target:  5'- -gGGGGUGGgCGCGGAccucguggaAGGaGGCAAa -3'
miRNA:   3'- agUUCCACUgGCGCCU---------UCCgUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 60133 0.66 0.764238
Target:  5'- --cAGGUGcgggaGCCGCcGAAGGCgAGCAGg -3'
miRNA:   3'- aguUCCAC-----UGGCGcCUUCCG-UCGUUg -5'
18384 5' -55.1 NC_004681.1 + 16521 0.66 0.764238
Target:  5'- ------aGAUgGCGGguGGCGGCAACg -3'
miRNA:   3'- aguuccaCUGgCGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 45526 0.66 0.764238
Target:  5'- cCGAGGgcGGCCaUGG-AGGCGGCGAa -3'
miRNA:   3'- aGUUCCa-CUGGcGCCuUCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 64912 0.66 0.764238
Target:  5'- aCGGGGUGcCCuCGGA-GGCGggauGCAGCu -3'
miRNA:   3'- aGUUCCACuGGcGCCUuCCGU----CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 37389 0.66 0.764238
Target:  5'- ---uGGaUGcCCGCGGccuucuuGGCGGCGACg -3'
miRNA:   3'- aguuCC-ACuGGCGCCuu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 32962 0.66 0.761207
Target:  5'- --cGGGUGcuucggcaacccguACCGCGcGAAGGguGuCAGCu -3'
miRNA:   3'- aguUCCAC--------------UGGCGC-CUUCCguC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 69221 0.66 0.754089
Target:  5'- gCGAGGgaggccaGGgCGCGGGcgAGGCGGCGc- -3'
miRNA:   3'- aGUUCCa------CUgGCGCCU--UCCGUCGUug -5'
18384 5' -55.1 NC_004681.1 + 17941 0.67 0.733438
Target:  5'- --cAGGUGAgUGCcGAGGGCGGCu-- -3'
miRNA:   3'- aguUCCACUgGCGcCUUCCGUCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.