miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 66498 0.67 0.722957
Target:  5'- cUCAccGGG-GACCugcgaGUGGAucAGGguGCAGCa -3'
miRNA:   3'- -AGU--UCCaCUGG-----CGCCU--UCCguCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 9063 0.67 0.712388
Target:  5'- gCGAGGaGGCCGa-GGAGGCGGUGAa -3'
miRNA:   3'- aGUUCCaCUGGCgcCUUCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 64357 0.67 0.701742
Target:  5'- -uGAGGc--CCGCGGAcaAGGCgugGGCGACa -3'
miRNA:   3'- agUUCCacuGGCGCCU--UCCG---UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 48490 0.67 0.701742
Target:  5'- aUCAAGGaacucGCCGCGGAgaacccggagcGGGUGGCGcACu -3'
miRNA:   3'- -AGUUCCac---UGGCGCCU-----------UCCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 45213 0.67 0.698534
Target:  5'- cCGGGGaUGACCgacuacacggucaaGCGGAacuacaagGGGCAGguGCu -3'
miRNA:   3'- aGUUCC-ACUGG--------------CGCCU--------UCCGUCguUG- -5'
18384 5' -55.1 NC_004681.1 + 66735 0.68 0.691029
Target:  5'- aCGcGGUGGCCaauGCGcaGAAGGCcgguGGCAACg -3'
miRNA:   3'- aGUuCCACUGG---CGC--CUUCCG----UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 17474 0.68 0.669448
Target:  5'- aCGAGGUccucGACCGCGcuGGaGCAGuCGGCg -3'
miRNA:   3'- aGUUCCA----CUGGCGCcuUC-CGUC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 19636 0.68 0.669448
Target:  5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3'
miRNA:   3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 33732 0.68 0.658601
Target:  5'- -gAAGGUGACCuGCGccuccAGGuCGGCGACc -3'
miRNA:   3'- agUUCCACUGG-CGCcu---UCC-GUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 41915 0.68 0.64773
Target:  5'- gCAGGGaaauGCCcCGGGAGGCGGCGu- -3'
miRNA:   3'- aGUUCCac--UGGcGCCUUCCGUCGUug -5'
18384 5' -55.1 NC_004681.1 + 44694 0.68 0.64773
Target:  5'- aCGGGGUGaguagugcggcgGCCGCGaGcgcGGCGGCGAUg -3'
miRNA:   3'- aGUUCCAC------------UGGCGC-Cuu-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 30140 0.68 0.64773
Target:  5'- cCGAGGccgaUGGCCGCGGc-GGCGaugacgguuGCGACg -3'
miRNA:   3'- aGUUCC----ACUGGCGCCuuCCGU---------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 62959 0.68 0.636844
Target:  5'- gCGGuGGUGGCgGCGGcGGcGCgAGCAGCu -3'
miRNA:   3'- aGUU-CCACUGgCGCCuUC-CG-UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 62633 0.69 0.625955
Target:  5'- cCGAGGUaGACgGUGucGGAGGCGGCuGCc -3'
miRNA:   3'- aGUUCCA-CUGgCGC--CUUCCGUCGuUG- -5'
18384 5' -55.1 NC_004681.1 + 14664 0.69 0.625955
Target:  5'- -gAAGGcGACUGCGGccgugguGGCGGUGGCg -3'
miRNA:   3'- agUUCCaCUGGCGCCuu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 10517 0.69 0.603115
Target:  5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3'
miRNA:   3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 20663 0.69 0.590107
Target:  5'- aUCGAGGUcACCGCGGAGuucccacgcaaugcGGUAgagaccGCGACa -3'
miRNA:   3'- -AGUUCCAcUGGCGCCUU--------------CCGU------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 30977 0.69 0.582541
Target:  5'- aCAGGGUG-UCGCGGGGcuccagcgggucGGCGGgCGGCg -3'
miRNA:   3'- aGUUCCACuGGCGCCUU------------CCGUC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 6588 0.7 0.571767
Target:  5'- gUCAAGGgcgccaugGGCCGCGGcaaggacaucaAGGGCuucgcgcuGCAACu -3'
miRNA:   3'- -AGUUCCa-------CUGGCGCC-----------UUCCGu-------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 30134 0.7 0.571767
Target:  5'- aCAAGGcGGCCuGUGGGucGGGCucaGGCGGCg -3'
miRNA:   3'- aGUUCCaCUGG-CGCCU--UCCG---UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.