miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 1005 0.66 0.793844
Target:  5'- cUCGAGGaUGGagGCGGAcgccaGGGCGGCuuCc -3'
miRNA:   3'- -AGUUCC-ACUggCGCCU-----UCCGUCGuuG- -5'
18384 5' -55.1 NC_004681.1 + 2027 0.78 0.195315
Target:  5'- --cAGGUGGUCGUGGAGGGCGGCcGCa -3'
miRNA:   3'- aguUCCACUGGCGCCUUCCGUCGuUG- -5'
18384 5' -55.1 NC_004681.1 + 6588 0.7 0.571767
Target:  5'- gUCAAGGgcgccaugGGCCGCGGcaaggacaucaAGGGCuucgcgcuGCAACu -3'
miRNA:   3'- -AGUUCCa-------CUGGCGCC-----------UUCCGu-------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 8633 0.66 0.793844
Target:  5'- -gAAGGgguucuggccgaUGGCCGCGG-GGGCGGUcuCa -3'
miRNA:   3'- agUUCC------------ACUGGCGCCuUCCGUCGuuG- -5'
18384 5' -55.1 NC_004681.1 + 9063 0.67 0.712388
Target:  5'- gCGAGGaGGCCGa-GGAGGCGGUGAa -3'
miRNA:   3'- aGUUCCaCUGGCgcCUUCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 10517 0.69 0.603115
Target:  5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3'
miRNA:   3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 10963 0.72 0.457945
Target:  5'- aUCAGGccagcGUGaACCGCGGGAGaggucgcaaucGCGGCGGCg -3'
miRNA:   3'- -AGUUC-----CAC-UGGCGCCUUC-----------CGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 12490 1.11 0.001023
Target:  5'- uUCAAGGUGACCGCGGAAGGCAGCAACg -3'
miRNA:   3'- -AGUUCCACUGGCGCCUUCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 14664 0.69 0.625955
Target:  5'- -gAAGGcGACUGCGGccgugguGGCGGUGGCg -3'
miRNA:   3'- agUUCCaCUGGCGCCuu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 15483 0.66 0.803396
Target:  5'- aCAGGGUG-CCGUucuGGAuGGCGuCGGCg -3'
miRNA:   3'- aGUUCCACuGGCG---CCUuCCGUcGUUG- -5'
18384 5' -55.1 NC_004681.1 + 16521 0.66 0.764238
Target:  5'- ------aGAUgGCGGguGGCGGCAACg -3'
miRNA:   3'- aguuccaCUGgCGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 17474 0.68 0.669448
Target:  5'- aCGAGGUccucGACCGCGcuGGaGCAGuCGGCg -3'
miRNA:   3'- aGUUCCA----CUGGCGCcuUC-CGUC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 17941 0.67 0.733438
Target:  5'- --cAGGUGAgUGCcGAGGGCGGCu-- -3'
miRNA:   3'- aguUCCACUgGCGcCUUCCGUCGuug -5'
18384 5' -55.1 NC_004681.1 + 18733 0.66 0.803396
Target:  5'- cCAAGGgcGACgGCGGcGAGGCcGCGc- -3'
miRNA:   3'- aGUUCCa-CUGgCGCC-UUCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 19636 0.68 0.669448
Target:  5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3'
miRNA:   3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 20663 0.69 0.590107
Target:  5'- aUCGAGGUcACCGCGGAGuucccacgcaaugcGGUAgagaccGCGACa -3'
miRNA:   3'- -AGUUCCAcUGGCGCCUU--------------CCGU------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 22521 0.71 0.477817
Target:  5'- uUCAGGGUGuAgUGCGGAGGGUugccguccGCGGCc -3'
miRNA:   3'- -AGUUCCAC-UgGCGCCUUCCGu-------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 23774 0.72 0.457945
Target:  5'- aUCGAGGUGACCGaGGAAGccaccGCAGgCAc- -3'
miRNA:   3'- -AGUUCCACUGGCgCCUUC-----CGUC-GUug -5'
18384 5' -55.1 NC_004681.1 + 25048 0.82 0.10712
Target:  5'- aCAcGGUGACCGCaGAGGGCGGCGcggGCg -3'
miRNA:   3'- aGUuCCACUGGCGcCUUCCGUCGU---UG- -5'
18384 5' -55.1 NC_004681.1 + 25182 0.66 0.793844
Target:  5'- cCGAGGUG-CCGa-GGAGGCugAGCGAg -3'
miRNA:   3'- aGUUCCACuGGCgcCUUCCG--UCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.