miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 69221 0.66 0.754089
Target:  5'- gCGAGGgaggccaGGgCGCGGGcgAGGCGGCGc- -3'
miRNA:   3'- aGUUCCa------CUgGCGCCU--UCCGUCGUug -5'
18384 5' -55.1 NC_004681.1 + 66735 0.68 0.691029
Target:  5'- aCGcGGUGGCCaauGCGcaGAAGGCcgguGGCAACg -3'
miRNA:   3'- aGUuCCACUGG---CGC--CUUCCG----UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 66498 0.67 0.722957
Target:  5'- cUCAccGGG-GACCugcgaGUGGAucAGGguGCAGCa -3'
miRNA:   3'- -AGU--UCCaCUGG-----CGCCU--UCCguCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 64912 0.66 0.764238
Target:  5'- aCGGGGUGcCCuCGGA-GGCGggauGCAGCu -3'
miRNA:   3'- aGUUCCACuGGcGCCUuCCGU----CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 64357 0.67 0.701742
Target:  5'- -uGAGGc--CCGCGGAcaAGGCgugGGCGACa -3'
miRNA:   3'- agUUCCacuGGCGCCU--UCCG---UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 63266 0.66 0.774254
Target:  5'- aUCAGGGUGucgaGCgGgGGAAGG-GGCGAg -3'
miRNA:   3'- -AGUUCCAC----UGgCgCCUUCCgUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 62959 0.68 0.636844
Target:  5'- gCGGuGGUGGCgGCGGcGGcGCgAGCAGCu -3'
miRNA:   3'- aGUU-CCACUGgCGCCuUC-CG-UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 62633 0.69 0.625955
Target:  5'- cCGAGGUaGACgGUGucGGAGGCGGCuGCc -3'
miRNA:   3'- aGUUCCA-CUGgCGC--CUUCCGUCGuUG- -5'
18384 5' -55.1 NC_004681.1 + 61855 0.66 0.774254
Target:  5'- cCGAuGGcGGCCGCGGucuGGUGGCGcGCg -3'
miRNA:   3'- aGUU-CCaCUGGCGCCuu-CCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 61394 0.7 0.52923
Target:  5'- cCAAGGUcGGCgGCaacagcaacGggGGCGGCAGCu -3'
miRNA:   3'- aGUUCCA-CUGgCGc--------CuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 60133 0.66 0.764238
Target:  5'- --cAGGUGcgggaGCCGCcGAAGGCgAGCAGg -3'
miRNA:   3'- aguUCCAC-----UGGCGcCUUCCG-UCGUUg -5'
18384 5' -55.1 NC_004681.1 + 58760 0.7 0.518771
Target:  5'- gCAGGuGUGGcCCGCGGcgcAGGCGGCcguGGCg -3'
miRNA:   3'- aGUUC-CACU-GGCGCCu--UCCGUCG---UUG- -5'
18384 5' -55.1 NC_004681.1 + 54681 0.7 0.52923
Target:  5'- aCGA--UGAUUGCGGggGGCAGCuGGCu -3'
miRNA:   3'- aGUUccACUGGCGCCuuCCGUCG-UUG- -5'
18384 5' -55.1 NC_004681.1 + 53238 0.66 0.774254
Target:  5'- --cGGGUGACUcaaCGGAAGGUAG-AACu -3'
miRNA:   3'- aguUCCACUGGc--GCCUUCCGUCgUUG- -5'
18384 5' -55.1 NC_004681.1 + 48490 0.67 0.701742
Target:  5'- aUCAAGGaacucGCCGCGGAgaacccggagcGGGUGGCGcACu -3'
miRNA:   3'- -AGUUCCac---UGGCGCCU-----------UCCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 46941 0.66 0.803396
Target:  5'- aUCGGGGUGccggggcgguuGCCGCGG--GGCuGCGu- -3'
miRNA:   3'- -AGUUCCAC-----------UGGCGCCuuCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 45526 0.66 0.764238
Target:  5'- cCGAGGgcGGCCaUGG-AGGCGGCGAa -3'
miRNA:   3'- aGUUCCa-CUGGcGCCuUCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 45213 0.67 0.698534
Target:  5'- cCGGGGaUGACCgacuacacggucaaGCGGAacuacaagGGGCAGguGCu -3'
miRNA:   3'- aGUUCC-ACUGG--------------CGCCU--------UCCGUCguUG- -5'
18384 5' -55.1 NC_004681.1 + 44694 0.68 0.64773
Target:  5'- aCGGGGUGaguagugcggcgGCCGCGaGcgcGGCGGCGAUg -3'
miRNA:   3'- aGUUCCAC------------UGGCGC-Cuu-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 43902 0.66 0.774254
Target:  5'- -gGGGGUGGgCGCGGAccucguggaAGGaGGCAAa -3'
miRNA:   3'- agUUCCACUgGCGCCU---------UCCgUCGUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.