Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18384 | 5' | -55.1 | NC_004681.1 | + | 41915 | 0.68 | 0.64773 |
Target: 5'- gCAGGGaaauGCCcCGGGAGGCGGCGu- -3' miRNA: 3'- aGUUCCac--UGGcGCCUUCCGUCGUug -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 40131 | 0.72 | 0.457945 |
Target: 5'- ---cGGUGACCGCccgGGAcAGGCAggccGCGACg -3' miRNA: 3'- aguuCCACUGGCG---CCU-UCCGU----CGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 39384 | 0.7 | 0.571767 |
Target: 5'- gUCGAuGGUGGCCGCgcacaucgGGGAGuacuugacGCGGCGGCc -3' miRNA: 3'- -AGUU-CCACUGGCG--------CCUUC--------CGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 38980 | 0.75 | 0.280279 |
Target: 5'- uUCAugcgcuGGGUGGCCGacgaGGAAGGCGuCAACg -3' miRNA: 3'- -AGU------UCCACUGGCg---CCUUCCGUcGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 37389 | 0.66 | 0.764238 |
Target: 5'- ---uGGaUGcCCGCGGccuucuuGGCGGCGACg -3' miRNA: 3'- aguuCC-ACuGGCGCCuu-----CCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 33732 | 0.68 | 0.658601 |
Target: 5'- -gAAGGUGACCuGCGccuccAGGuCGGCGACc -3' miRNA: 3'- agUUCCACUGG-CGCcu---UCC-GUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 32962 | 0.66 | 0.761207 |
Target: 5'- --cGGGUGcuucggcaacccguACCGCGcGAAGGguGuCAGCu -3' miRNA: 3'- aguUCCAC--------------UGGCGC-CUUCCguC-GUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 30977 | 0.69 | 0.582541 |
Target: 5'- aCAGGGUG-UCGCGGGGcuccagcgggucGGCGGgCGGCg -3' miRNA: 3'- aGUUCCACuGGCGCCUU------------CCGUC-GUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 30140 | 0.68 | 0.64773 |
Target: 5'- cCGAGGccgaUGGCCGCGGc-GGCGaugacgguuGCGACg -3' miRNA: 3'- aGUUCC----ACUGGCGCCuuCCGU---------CGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 30134 | 0.7 | 0.571767 |
Target: 5'- aCAAGGcGGCCuGUGGGucGGGCucaGGCGGCg -3' miRNA: 3'- aGUUCCaCUGG-CGCCU--UCCG---UCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 28137 | 0.71 | 0.477817 |
Target: 5'- gCAAcGGcGGCgGCGGAucgagcGGCGGCAGCg -3' miRNA: 3'- aGUU-CCaCUGgCGCCUu-----CCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 27754 | 0.77 | 0.222732 |
Target: 5'- ---cGGUGACgCGCGGcAGcGGCGGCAGCg -3' miRNA: 3'- aguuCCACUG-GCGCC-UU-CCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 27620 | 0.66 | 0.793844 |
Target: 5'- ---cGGUGGCgcugGCGGc-GGCGGCGGCu -3' miRNA: 3'- aguuCCACUGg---CGCCuuCCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 27122 | 0.66 | 0.774254 |
Target: 5'- -gAAGGcGACCGCGu-AGGCGGUg-- -3' miRNA: 3'- agUUCCaCUGGCGCcuUCCGUCGuug -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 25182 | 0.66 | 0.793844 |
Target: 5'- cCGAGGUG-CCGa-GGAGGCugAGCGAg -3' miRNA: 3'- aGUUCCACuGGCgcCUUCCG--UCGUUg -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 25048 | 0.82 | 0.10712 |
Target: 5'- aCAcGGUGACCGCaGAGGGCGGCGcggGCg -3' miRNA: 3'- aGUuCCACUGGCGcCUUCCGUCGU---UG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 23774 | 0.72 | 0.457945 |
Target: 5'- aUCGAGGUGACCGaGGAAGccaccGCAGgCAc- -3' miRNA: 3'- -AGUUCCACUGGCgCCUUC-----CGUC-GUug -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 22521 | 0.71 | 0.477817 |
Target: 5'- uUCAGGGUGuAgUGCGGAGGGUugccguccGCGGCc -3' miRNA: 3'- -AGUUCCAC-UgGCGCCUUCCGu-------CGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 20663 | 0.69 | 0.590107 |
Target: 5'- aUCGAGGUcACCGCGGAGuucccacgcaaugcGGUAgagaccGCGACa -3' miRNA: 3'- -AGUUCCAcUGGCGCCUU--------------CCGU------CGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 19636 | 0.68 | 0.669448 |
Target: 5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3' miRNA: 3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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