Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18384 | 5' | -55.1 | NC_004681.1 | + | 18733 | 0.66 | 0.803396 |
Target: 5'- cCAAGGgcGACgGCGGcGAGGCcGCGc- -3' miRNA: 3'- aGUUCCa-CUGgCGCC-UUCCGuCGUug -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 17941 | 0.67 | 0.733438 |
Target: 5'- --cAGGUGAgUGCcGAGGGCGGCu-- -3' miRNA: 3'- aguUCCACUgGCGcCUUCCGUCGuug -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 17474 | 0.68 | 0.669448 |
Target: 5'- aCGAGGUccucGACCGCGcuGGaGCAGuCGGCg -3' miRNA: 3'- aGUUCCA----CUGGCGCcuUC-CGUC-GUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 16521 | 0.66 | 0.764238 |
Target: 5'- ------aGAUgGCGGguGGCGGCAACg -3' miRNA: 3'- aguuccaCUGgCGCCuuCCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 15483 | 0.66 | 0.803396 |
Target: 5'- aCAGGGUG-CCGUucuGGAuGGCGuCGGCg -3' miRNA: 3'- aGUUCCACuGGCG---CCUuCCGUcGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 14664 | 0.69 | 0.625955 |
Target: 5'- -gAAGGcGACUGCGGccgugguGGCGGUGGCg -3' miRNA: 3'- agUUCCaCUGGCGCCuu-----CCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 12490 | 1.11 | 0.001023 |
Target: 5'- uUCAAGGUGACCGCGGAAGGCAGCAACg -3' miRNA: 3'- -AGUUCCACUGGCGCCUUCCGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 10963 | 0.72 | 0.457945 |
Target: 5'- aUCAGGccagcGUGaACCGCGGGAGaggucgcaaucGCGGCGGCg -3' miRNA: 3'- -AGUUC-----CAC-UGGCGCCUUC-----------CGUCGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 10517 | 0.69 | 0.603115 |
Target: 5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3' miRNA: 3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 9063 | 0.67 | 0.712388 |
Target: 5'- gCGAGGaGGCCGa-GGAGGCGGUGAa -3' miRNA: 3'- aGUUCCaCUGGCgcCUUCCGUCGUUg -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 8633 | 0.66 | 0.793844 |
Target: 5'- -gAAGGgguucuggccgaUGGCCGCGG-GGGCGGUcuCa -3' miRNA: 3'- agUUCC------------ACUGGCGCCuUCCGUCGuuG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 6588 | 0.7 | 0.571767 |
Target: 5'- gUCAAGGgcgccaugGGCCGCGGcaaggacaucaAGGGCuucgcgcuGCAACu -3' miRNA: 3'- -AGUUCCa-------CUGGCGCC-----------UUCCGu-------CGUUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 2027 | 0.78 | 0.195315 |
Target: 5'- --cAGGUGGUCGUGGAGGGCGGCcGCa -3' miRNA: 3'- aguUCCACUGGCGCCUUCCGUCGuUG- -5' |
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18384 | 5' | -55.1 | NC_004681.1 | + | 1005 | 0.66 | 0.793844 |
Target: 5'- cUCGAGGaUGGagGCGGAcgccaGGGCGGCuuCc -3' miRNA: 3'- -AGUUCC-ACUggCGCCU-----UCCGUCGuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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