miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 32962 0.66 0.761207
Target:  5'- --cGGGUGcuucggcaacccguACCGCGcGAAGGguGuCAGCu -3'
miRNA:   3'- aguUCCAC--------------UGGCGC-CUUCCguC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 10517 0.69 0.603115
Target:  5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3'
miRNA:   3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 62959 0.68 0.636844
Target:  5'- gCGGuGGUGGCgGCGGcGGcGCgAGCAGCu -3'
miRNA:   3'- aGUU-CCACUGgCGCCuUC-CG-UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 19636 0.68 0.669448
Target:  5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3'
miRNA:   3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 66735 0.68 0.691029
Target:  5'- aCGcGGUGGCCaauGCGcaGAAGGCcgguGGCAACg -3'
miRNA:   3'- aGUuCCACUGG---CGC--CUUCCG----UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 45213 0.67 0.698534
Target:  5'- cCGGGGaUGACCgacuacacggucaaGCGGAacuacaagGGGCAGguGCu -3'
miRNA:   3'- aGUUCC-ACUGG--------------CGCCU--------UCCGUCguUG- -5'
18384 5' -55.1 NC_004681.1 + 48490 0.67 0.701742
Target:  5'- aUCAAGGaacucGCCGCGGAgaacccggagcGGGUGGCGcACu -3'
miRNA:   3'- -AGUUCCac---UGGCGCCU-----------UCCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 64357 0.67 0.701742
Target:  5'- -uGAGGc--CCGCGGAcaAGGCgugGGCGACa -3'
miRNA:   3'- agUUCCacuGGCGCCU--UCCG---UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 17941 0.67 0.733438
Target:  5'- --cAGGUGAgUGCcGAGGGCGGCu-- -3'
miRNA:   3'- aguUCCACUgGCGcCUUCCGUCGuug -5'
18384 5' -55.1 NC_004681.1 + 20663 0.69 0.590107
Target:  5'- aUCGAGGUcACCGCGGAGuucccacgcaaugcGGUAgagaccGCGACa -3'
miRNA:   3'- -AGUUCCAcUGGCGCCUU--------------CCGU------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 30134 0.7 0.571767
Target:  5'- aCAAGGcGGCCuGUGGGucGGGCucaGGCGGCg -3'
miRNA:   3'- aGUUCCaCUGG-CGCCU--UCCG---UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 6588 0.7 0.571767
Target:  5'- gUCAAGGgcgccaugGGCCGCGGcaaggacaucaAGGGCuucgcgcuGCAACu -3'
miRNA:   3'- -AGUUCCa-------CUGGCGCC-----------UUCCGu-------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 25048 0.82 0.10712
Target:  5'- aCAcGGUGACCGCaGAGGGCGGCGcggGCg -3'
miRNA:   3'- aGUuCCACUGGCGcCUUCCGUCGU---UG- -5'
18384 5' -55.1 NC_004681.1 + 2027 0.78 0.195315
Target:  5'- --cAGGUGGUCGUGGAGGGCGGCcGCa -3'
miRNA:   3'- aguUCCACUGGCGCCUUCCGUCGuUG- -5'
18384 5' -55.1 NC_004681.1 + 27754 0.77 0.222732
Target:  5'- ---cGGUGACgCGCGGcAGcGGCGGCAGCg -3'
miRNA:   3'- aguuCCACUG-GCGCC-UU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 38980 0.75 0.280279
Target:  5'- uUCAugcgcuGGGUGGCCGacgaGGAAGGCGuCAACg -3'
miRNA:   3'- -AGU------UCCACUGGCg---CCUUCCGUcGUUG- -5'
18384 5' -55.1 NC_004681.1 + 40131 0.72 0.457945
Target:  5'- ---cGGUGACCGCccgGGAcAGGCAggccGCGACg -3'
miRNA:   3'- aguuCCACUGGCG---CCU-UCCGU----CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 23774 0.72 0.457945
Target:  5'- aUCGAGGUGACCGaGGAAGccaccGCAGgCAc- -3'
miRNA:   3'- -AGUUCCACUGGCgCCUUC-----CGUC-GUug -5'
18384 5' -55.1 NC_004681.1 + 28137 0.71 0.477817
Target:  5'- gCAAcGGcGGCgGCGGAucgagcGGCGGCAGCg -3'
miRNA:   3'- aGUU-CCaCUGgCGCCUu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 61394 0.7 0.52923
Target:  5'- cCAAGGUcGGCgGCaacagcaacGggGGCGGCAGCu -3'
miRNA:   3'- aGUUCCA-CUGgCGc--------CuuCCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.