miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 45526 0.66 0.764238
Target:  5'- cCGAGGgcGGCCaUGG-AGGCGGCGAa -3'
miRNA:   3'- aGUUCCa-CUGGcGCCuUCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 8633 0.66 0.793844
Target:  5'- -gAAGGgguucuggccgaUGGCCGCGG-GGGCGGUcuCa -3'
miRNA:   3'- agUUCC------------ACUGGCGCCuUCCGUCGuuG- -5'
18384 5' -55.1 NC_004681.1 + 30140 0.68 0.64773
Target:  5'- cCGAGGccgaUGGCCGCGGc-GGCGaugacgguuGCGACg -3'
miRNA:   3'- aGUUCC----ACUGGCGCCuuCCGU---------CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 63266 0.66 0.774254
Target:  5'- aUCAGGGUGucgaGCgGgGGAAGG-GGCGAg -3'
miRNA:   3'- -AGUUCCAC----UGgCgCCUUCCgUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 43902 0.66 0.774254
Target:  5'- -gGGGGUGGgCGCGGAccucguggaAGGaGGCAAa -3'
miRNA:   3'- agUUCCACUgGCGCCU---------UCCgUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 25182 0.66 0.793844
Target:  5'- cCGAGGUG-CCGa-GGAGGCugAGCGAg -3'
miRNA:   3'- aGUUCCACuGGCgcCUUCCG--UCGUUg -5'
18384 5' -55.1 NC_004681.1 + 64912 0.66 0.764238
Target:  5'- aCGGGGUGcCCuCGGA-GGCGggauGCAGCu -3'
miRNA:   3'- aGUUCCACuGGcGCCUuCCGU----CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 53238 0.66 0.774254
Target:  5'- --cGGGUGACUcaaCGGAAGGUAG-AACu -3'
miRNA:   3'- aguUCCACUGGc--GCCUUCCGUCgUUG- -5'
18384 5' -55.1 NC_004681.1 + 61855 0.66 0.774254
Target:  5'- cCGAuGGcGGCCGCGGucuGGUGGCGcGCg -3'
miRNA:   3'- aGUU-CCaCUGGCGCCuu-CCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 10517 0.69 0.603115
Target:  5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3'
miRNA:   3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 2027 0.78 0.195315
Target:  5'- --cAGGUGGUCGUGGAGGGCGGCcGCa -3'
miRNA:   3'- aguUCCACUGGCGCCUUCCGUCGuUG- -5'
18384 5' -55.1 NC_004681.1 + 16521 0.66 0.764238
Target:  5'- ------aGAUgGCGGguGGCGGCAACg -3'
miRNA:   3'- aguuccaCUGgCGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 40131 0.72 0.457945
Target:  5'- ---cGGUGACCGCccgGGAcAGGCAggccGCGACg -3'
miRNA:   3'- aguuCCACUGGCG---CCU-UCCGU----CGUUG- -5'
18384 5' -55.1 NC_004681.1 + 37389 0.66 0.764238
Target:  5'- ---uGGaUGcCCGCGGccuucuuGGCGGCGACg -3'
miRNA:   3'- aguuCC-ACuGGCGCCuu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 23774 0.72 0.457945
Target:  5'- aUCGAGGUGACCGaGGAAGccaccGCAGgCAc- -3'
miRNA:   3'- -AGUUCCACUGGCgCCUUC-----CGUC-GUug -5'
18384 5' -55.1 NC_004681.1 + 27620 0.66 0.793844
Target:  5'- ---cGGUGGCgcugGCGGc-GGCGGCGGCu -3'
miRNA:   3'- aguuCCACUGg---CGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 18733 0.66 0.803396
Target:  5'- cCAAGGgcGACgGCGGcGAGGCcGCGc- -3'
miRNA:   3'- aGUUCCa-CUGgCGCC-UUCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 19636 0.68 0.669448
Target:  5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3'
miRNA:   3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 62959 0.68 0.636844
Target:  5'- gCGGuGGUGGCgGCGGcGGcGCgAGCAGCu -3'
miRNA:   3'- aGUU-CCACUGgCGCCuUC-CG-UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 20663 0.69 0.590107
Target:  5'- aUCGAGGUcACCGCGGAGuucccacgcaaugcGGUAgagaccGCGACa -3'
miRNA:   3'- -AGUUCCAcUGGCGCCUU--------------CCGU------CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.