miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18384 5' -55.1 NC_004681.1 + 10517 0.69 0.603115
Target:  5'- gCAAGGgcgcgaaguccGACCGCGGAaucccgcAGGCGGUGGa -3'
miRNA:   3'- aGUUCCa----------CUGGCGCCU-------UCCGUCGUUg -5'
18384 5' -55.1 NC_004681.1 + 62959 0.68 0.636844
Target:  5'- gCGGuGGUGGCgGCGGcGGcGCgAGCAGCu -3'
miRNA:   3'- aGUU-CCACUGgCGCCuUC-CG-UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 18733 0.66 0.803396
Target:  5'- cCAAGGgcGACgGCGGcGAGGCcGCGc- -3'
miRNA:   3'- aGUUCCa-CUGgCGCC-UUCCGuCGUug -5'
18384 5' -55.1 NC_004681.1 + 27620 0.66 0.793844
Target:  5'- ---cGGUGGCgcugGCGGc-GGCGGCGGCu -3'
miRNA:   3'- aguuCCACUGg---CGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 37389 0.66 0.764238
Target:  5'- ---uGGaUGcCCGCGGccuucuuGGCGGCGACg -3'
miRNA:   3'- aguuCC-ACuGGCGCCuu-----CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 32962 0.66 0.761207
Target:  5'- --cGGGUGcuucggcaacccguACCGCGcGAAGGguGuCAGCu -3'
miRNA:   3'- aguUCCAC--------------UGGCGC-CUUCCguC-GUUG- -5'
18384 5' -55.1 NC_004681.1 + 17941 0.67 0.733438
Target:  5'- --cAGGUGAgUGCcGAGGGCGGCu-- -3'
miRNA:   3'- aguUCCACUgGCGcCUUCCGUCGuug -5'
18384 5' -55.1 NC_004681.1 + 16521 0.66 0.764238
Target:  5'- ------aGAUgGCGGguGGCGGCAACg -3'
miRNA:   3'- aguuccaCUGgCGCCuuCCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 64357 0.67 0.701742
Target:  5'- -uGAGGc--CCGCGGAcaAGGCgugGGCGACa -3'
miRNA:   3'- agUUCCacuGGCGCCU--UCCG---UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 48490 0.67 0.701742
Target:  5'- aUCAAGGaacucGCCGCGGAgaacccggagcGGGUGGCGcACu -3'
miRNA:   3'- -AGUUCCac---UGGCGCCU-----------UCCGUCGU-UG- -5'
18384 5' -55.1 NC_004681.1 + 45213 0.67 0.698534
Target:  5'- cCGGGGaUGACCgacuacacggucaaGCGGAacuacaagGGGCAGguGCu -3'
miRNA:   3'- aGUUCC-ACUGG--------------CGCCU--------UCCGUCguUG- -5'
18384 5' -55.1 NC_004681.1 + 66735 0.68 0.691029
Target:  5'- aCGcGGUGGCCaauGCGcaGAAGGCcgguGGCAACg -3'
miRNA:   3'- aGUuCCACUGG---CGC--CUUCCG----UCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 19636 0.68 0.669448
Target:  5'- -gAGGGUGggcaaGCC-UGGGAcGGCAGCGGCa -3'
miRNA:   3'- agUUCCAC-----UGGcGCCUU-CCGUCGUUG- -5'
18384 5' -55.1 NC_004681.1 + 12490 1.11 0.001023
Target:  5'- uUCAAGGUGACCGCGGAAGGCAGCAACg -3'
miRNA:   3'- -AGUUCCACUGGCGCCUUCCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.