Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18385 | 3' | -57.6 | NC_004681.1 | + | 40224 | 0.65 | 0.720324 |
Target: 5'- cUGuCCCGGG-CGGuCACCgaccuggcgaccCCCGGGg -3' miRNA: 3'- cAC-GGGCCCaGUUuGUGGaa----------GGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 32861 | 0.66 | 0.703903 |
Target: 5'- -cGCCUuggugGGGUacucgcaGGGCGCCgagguggugUCCCGGGu -3' miRNA: 3'- caCGGG-----CCCAg------UUUGUGGa--------AGGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 37293 | 0.66 | 0.703903 |
Target: 5'- uUGCgCCGGGUCAGcuccaggauGgGCUUgCCCGGu -3' miRNA: 3'- cACG-GGCCCAGUU---------UgUGGAaGGGCCc -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 15692 | 0.66 | 0.672704 |
Target: 5'- -cGCCuCGgaGGUCAugGACACCUa-CCGGGc -3' miRNA: 3'- caCGG-GC--CCAGU--UUGUGGAagGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 4075 | 0.67 | 0.662221 |
Target: 5'- uUGUCCGGGUCuuccAugACCcguuccaucUCCCGGu -3' miRNA: 3'- cACGGGCCCAGu---UugUGGa--------AGGGCCc -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 71464 | 0.67 | 0.641187 |
Target: 5'- cGUGCCCaaaguaGG-CAGACAcggugcCCUgUCCCGGGu -3' miRNA: 3'- -CACGGGc-----CCaGUUUGU------GGA-AGGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 32364 | 0.67 | 0.640134 |
Target: 5'- --cCCCaGGUCGAugGCCUUgaguucgUCCGGGc -3' miRNA: 3'- cacGGGcCCAGUUugUGGAA-------GGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 56764 | 0.67 | 0.630655 |
Target: 5'- cGUGCCgCGGGgCGAGgccCACCUguacgucuaCCGGGu -3' miRNA: 3'- -CACGG-GCCCaGUUU---GUGGAag-------GGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 46878 | 0.67 | 0.630655 |
Target: 5'- uUGUCCGGGUgGAGuuCACCgUCUuCGGGc -3' miRNA: 3'- cACGGGCCCAgUUU--GUGGaAGG-GCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 18398 | 0.67 | 0.609602 |
Target: 5'- -gGCCgCGGcGgCAAACGCCUUcgcaCCCGGa -3' miRNA: 3'- caCGG-GCC-CaGUUUGUGGAA----GGGCCc -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 32276 | 0.68 | 0.599098 |
Target: 5'- cGUGCCCGGGUUGAGCGuguucacgaccuCCUUgaCGcGGu -3' miRNA: 3'- -CACGGGCCCAGUUUGU------------GGAAggGC-CC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 44475 | 0.68 | 0.576091 |
Target: 5'- uUGCCCGGa-CGGGCGCCcguagggucaggUCUCGGGg -3' miRNA: 3'- cACGGGCCcaGUUUGUGGa-----------AGGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 24714 | 0.68 | 0.567771 |
Target: 5'- cGUGCCaUGGGUCGgcaucgcagucGACACCggcaaCGGGg -3' miRNA: 3'- -CACGG-GCCCAGU-----------UUGUGGaagg-GCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 58908 | 0.69 | 0.536875 |
Target: 5'- cUGUCCGGGUgAGGC-CCagcaacUCCUGGGc -3' miRNA: 3'- cACGGGCCCAgUUUGuGGa-----AGGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 56318 | 0.69 | 0.536875 |
Target: 5'- -cGCUCGGGUC-GACGCCggUCCaGGc -3' miRNA: 3'- caCGGGCCCAGuUUGUGGaaGGGcCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 39973 | 0.69 | 0.486795 |
Target: 5'- -gGCgCCGGGUCAAcuCACCggCUCGGc -3' miRNA: 3'- caCG-GGCCCAGUUu-GUGGaaGGGCCc -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 21536 | 0.69 | 0.486795 |
Target: 5'- uUGCCgGGGUUGAggaacggcgccaGCACCUUgCCCaGGa -3' miRNA: 3'- cACGGgCCCAGUU------------UGUGGAA-GGGcCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 28485 | 0.7 | 0.47704 |
Target: 5'- -cGCCCGGGgcugggCucACACUcacCCCGGGc -3' miRNA: 3'- caCGGGCCCa-----GuuUGUGGaa-GGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 40123 | 0.7 | 0.467383 |
Target: 5'- -cGCCa-GGUCGGugACCg-CCCGGGa -3' miRNA: 3'- caCGGgcCCAGUUugUGGaaGGGCCC- -5' |
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18385 | 3' | -57.6 | NC_004681.1 | + | 58815 | 0.7 | 0.467383 |
Target: 5'- -cGCCCGGGUCGAAuuCGCCca-UCGGa -3' miRNA: 3'- caCGGGCCCAGUUU--GUGGaagGGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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