miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18386 3' -56.6 NC_004681.1 + 9267 0.66 0.745066
Target:  5'- aGGAcgccaauGGCCaguacaUGGGCGGCAACuUCu -3'
miRNA:   3'- gCCUuu-----CCGGg-----ACUCGCCGUUGcAGu -5'
18386 3' -56.6 NC_004681.1 + 27880 0.66 0.745066
Target:  5'- gCGGAcauGGCUC-GGGCGGCAccaacuCGUCc -3'
miRNA:   3'- -GCCUuu-CCGGGaCUCGCCGUu-----GCAGu -5'
18386 3' -56.6 NC_004681.1 + 31385 0.66 0.734874
Target:  5'- aCGGuGAGGGCUacgGGGCGcGCGACGg-- -3'
miRNA:   3'- -GCC-UUUCCGGga-CUCGC-CGUUGCagu -5'
18386 3' -56.6 NC_004681.1 + 45173 0.66 0.724585
Target:  5'- gCGGcGAGGGCCUcGAccGCGGCGgaugcuucgGCGUCc -3'
miRNA:   3'- -GCC-UUUCCGGGaCU--CGCCGU---------UGCAGu -5'
18386 3' -56.6 NC_004681.1 + 38828 0.66 0.724585
Target:  5'- ----cGGGCCUacGGCGGCAGCGUgGa -3'
miRNA:   3'- gccuuUCCGGGacUCGCCGUUGCAgU- -5'
18386 3' -56.6 NC_004681.1 + 71730 0.66 0.714209
Target:  5'- gCGaGGAAGGCUCUGAGcCGGUucacuACGa-- -3'
miRNA:   3'- -GC-CUUUCCGGGACUC-GCCGu----UGCagu -5'
18386 3' -56.6 NC_004681.1 + 25809 0.66 0.714209
Target:  5'- aGGuaguaGCCCU--GCGGCGAUGUCAc -3'
miRNA:   3'- gCCuuuc-CGGGAcuCGCCGUUGCAGU- -5'
18386 3' -56.6 NC_004681.1 + 61707 0.66 0.714209
Target:  5'- gGGcgGGGCUCauggGAGUGGguGCaGUCAa -3'
miRNA:   3'- gCCuuUCCGGGa---CUCGCCguUG-CAGU- -5'
18386 3' -56.6 NC_004681.1 + 55357 0.66 0.713167
Target:  5'- gCGGAgucgggauugacgAAGuGCCCUGcaccAGCGaCGACGUCGu -3'
miRNA:   3'- -GCCU-------------UUC-CGGGAC----UCGCcGUUGCAGU- -5'
18386 3' -56.6 NC_004681.1 + 27619 0.66 0.703757
Target:  5'- uCGGu--GGCgCUG-GCGGCGGCGgCGg -3'
miRNA:   3'- -GCCuuuCCGgGACuCGCCGUUGCaGU- -5'
18386 3' -56.6 NC_004681.1 + 26206 0.66 0.693238
Target:  5'- aCGGAAAcguccuGGCCCgccacGGCGGCGAUGcCc -3'
miRNA:   3'- -GCCUUU------CCGGGac---UCGCCGUUGCaGu -5'
18386 3' -56.6 NC_004681.1 + 21938 0.67 0.682664
Target:  5'- uCGGGAAGGaCCUcuucgUG-GCGGCcuGGCGUCc -3'
miRNA:   3'- -GCCUUUCC-GGG-----ACuCGCCG--UUGCAGu -5'
18386 3' -56.6 NC_004681.1 + 475 0.67 0.682664
Target:  5'- uGGGGAGGCgCCUggccGAGauGCugGGCGUCAa -3'
miRNA:   3'- gCCUUUCCG-GGA----CUCgcCG--UUGCAGU- -5'
18386 3' -56.6 NC_004681.1 + 21413 0.67 0.672044
Target:  5'- aGGAGAGcGUCCUGGGCaaggugcuGGCGcCGUUc -3'
miRNA:   3'- gCCUUUC-CGGGACUCG--------CCGUuGCAGu -5'
18386 3' -56.6 NC_004681.1 + 31241 0.67 0.672044
Target:  5'- gGGAccGGCgCC-GAGUguuuggcuacGGCAACGUCGg -3'
miRNA:   3'- gCCUuuCCG-GGaCUCG----------CCGUUGCAGU- -5'
18386 3' -56.6 NC_004681.1 + 1060 0.67 0.672044
Target:  5'- aGGAuguacGGCCCgaugGAGCccuGGCAGCG-CGa -3'
miRNA:   3'- gCCUuu---CCGGGa---CUCG---CCGUUGCaGU- -5'
18386 3' -56.6 NC_004681.1 + 37389 0.67 0.672044
Target:  5'- uGGAugcccgcGGCCUUcuuGGCGGCGACGgUCAa -3'
miRNA:   3'- gCCUuu-----CCGGGAc--UCGCCGUUGC-AGU- -5'
18386 3' -56.6 NC_004681.1 + 49637 0.67 0.661388
Target:  5'- gGGGAAGGCC---AG-GGCGAUGUCGg -3'
miRNA:   3'- gCCUUUCCGGgacUCgCCGUUGCAGU- -5'
18386 3' -56.6 NC_004681.1 + 19188 0.67 0.661388
Target:  5'- cCGGGu--GUCCUGGGUGGUGACGcCGg -3'
miRNA:   3'- -GCCUuucCGGGACUCGCCGUUGCaGU- -5'
18386 3' -56.6 NC_004681.1 + 14873 0.67 0.640009
Target:  5'- aGGAu-GGCCa-GGGCGuccGCGGCGUCAc -3'
miRNA:   3'- gCCUuuCCGGgaCUCGC---CGUUGCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.