miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18386 5' -56.7 NC_004681.1 + 3105 0.71 0.434589
Target:  5'- cGCUGGCGUagucguaggagaGCGggUACCGGCUGCc- -3'
miRNA:   3'- -CGACUGCAg-----------CGCgaGUGGCCGAUGug -5'
18386 5' -56.7 NC_004681.1 + 8930 0.67 0.690625
Target:  5'- --cGGCGUCaacggccugcugcaGCGUUCgACCGGCUuCACc -3'
miRNA:   3'- cgaCUGCAG--------------CGCGAG-UGGCCGAuGUG- -5'
18386 5' -56.7 NC_004681.1 + 9078 0.68 0.577026
Target:  5'- cGCUGAaguaugGcCGCGUcgUCACCGGCgcCGCu -3'
miRNA:   3'- -CGACUg-----CaGCGCG--AGUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 10378 0.67 0.672678
Target:  5'- gGC-GACGUCGaucaGCUCAuCCGGCa---- -3'
miRNA:   3'- -CGaCUGCAGCg---CGAGU-GGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 10761 0.66 0.704249
Target:  5'- cGC-GACGgcCGCGggCACCGGggGCGCc -3'
miRNA:   3'- -CGaCUGCa-GCGCgaGUGGCCgaUGUG- -5'
18386 5' -56.7 NC_004681.1 + 12974 1.05 0.002015
Target:  5'- cCUGACGUCGCGCUCACCGGCUACACc -3'
miRNA:   3'- cGACUGCAGCGCGAGUGGCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 14427 0.67 0.651435
Target:  5'- cUUGGCG-CGCaGCUCAUUGGCccGCGCc -3'
miRNA:   3'- cGACUGCaGCG-CGAGUGGCCGa-UGUG- -5'
18386 5' -56.7 NC_004681.1 + 16149 0.66 0.714655
Target:  5'- cGCUGGCGgccauccCGuCGCUCAUCGcGCUGu-- -3'
miRNA:   3'- -CGACUGCa------GC-GCGAGUGGC-CGAUgug -5'
18386 5' -56.7 NC_004681.1 + 16675 0.66 0.74537
Target:  5'- uGCUGGCGaCgGCGCUCcgagcACCGGCc---- -3'
miRNA:   3'- -CGACUGCaG-CGCGAG-----UGGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 17303 0.7 0.47481
Target:  5'- uGCUGGCGcgCGUGCcCGCgGgacGCUACACg -3'
miRNA:   3'- -CGACUGCa-GCGCGaGUGgC---CGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 17658 0.71 0.445882
Target:  5'- cGCUGGCGguucgauccCGCuCUCACCGGCagcucccgacUACGCc -3'
miRNA:   3'- -CGACUGCa--------GCGcGAGUGGCCG----------AUGUG- -5'
18386 5' -56.7 NC_004681.1 + 20142 0.67 0.693778
Target:  5'- gGCcagGuCGUCaUGCUCAccacgcugccCCGGCUGCGCu -3'
miRNA:   3'- -CGa--CuGCAGcGCGAGU----------GGCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 24770 0.72 0.391138
Target:  5'- cGCa-GCGcaUCGCGCUCGCUGGCgcCACg -3'
miRNA:   3'- -CGacUGC--AGCGCGAGUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 27191 0.67 0.65037
Target:  5'- --aGGCG-CGCGCUaccgggcgaaguaCACCGGCgucGCGCc -3'
miRNA:   3'- cgaCUGCaGCGCGA-------------GUGGCCGa--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 29428 0.68 0.598193
Target:  5'- aCUGGCGaggUCGC-CUCGggcaaCGGCUACACc -3'
miRNA:   3'- cGACUGC---AGCGcGAGUg----GCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 32693 0.66 0.714655
Target:  5'- cGCcGACGUCGCGCg-GCUGGUg---- -3'
miRNA:   3'- -CGaCUGCAGCGCGagUGGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 33364 0.72 0.391138
Target:  5'- gGCUGagaccggccGCGUCGCGCgCGCCGuGUgGCACc -3'
miRNA:   3'- -CGAC---------UGCAGCGCGaGUGGC-CGaUGUG- -5'
18386 5' -56.7 NC_004681.1 + 39315 0.66 0.724984
Target:  5'- cCUG-CG-CGCGCggCGCCGcGCUggACACg -3'
miRNA:   3'- cGACuGCaGCGCGa-GUGGC-CGA--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 40151 0.68 0.630125
Target:  5'- uGCUGGCGUCGgccUGCgggAUCGGCUuCGCc -3'
miRNA:   3'- -CGACUGCAGC---GCGag-UGGCCGAuGUG- -5'
18386 5' -56.7 NC_004681.1 + 40475 0.66 0.714655
Target:  5'- cGCUGGCGgUGcCGCUCuuGCUGGCgguguuCACc -3'
miRNA:   3'- -CGACUGCaGC-GCGAG--UGGCCGau----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.