miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18386 5' -56.7 NC_004681.1 + 29428 0.68 0.598193
Target:  5'- aCUGGCGaggUCGC-CUCGggcaaCGGCUACACc -3'
miRNA:   3'- cGACUGC---AGCGcGAGUg----GCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 51406 0.68 0.587592
Target:  5'- -aUGACGUCgGCGgaCUCACCGGC--CAUg -3'
miRNA:   3'- cgACUGCAG-CGC--GAGUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 9078 0.68 0.577026
Target:  5'- cGCUGAaguaugGcCGCGUcgUCACCGGCgcCGCu -3'
miRNA:   3'- -CGACUg-----CaGCGCG--AGUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 50930 0.68 0.577026
Target:  5'- uGCUGcauCGUcggucaCGCGCUgGCCaaguucGGCUACACc -3'
miRNA:   3'- -CGACu--GCA------GCGCGAgUGG------CCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 54818 0.69 0.566503
Target:  5'- cGgaGACGUaGCGC-CACUGGUgcaGCACg -3'
miRNA:   3'- -CgaCUGCAgCGCGaGUGGCCGa--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 17303 0.7 0.47481
Target:  5'- uGCUGGCGcgCGUGCcCGCgGgacGCUACACg -3'
miRNA:   3'- -CGACUGCa-GCGCGaGUGgC---CGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 53635 0.71 0.445882
Target:  5'- -aUGACGaCGCGCUgGCCGuugaGCUugACg -3'
miRNA:   3'- cgACUGCaGCGCGAgUGGC----CGAugUG- -5'
18386 5' -56.7 NC_004681.1 + 17658 0.71 0.445882
Target:  5'- cGCUGGCGguucgauccCGCuCUCACCGGCagcucccgacUACGCc -3'
miRNA:   3'- -CGACUGCa--------GCGcGAGUGGCCG----------AUGUG- -5'
18386 5' -56.7 NC_004681.1 + 3105 0.71 0.434589
Target:  5'- cGCUGGCGUagucguaggagaGCGggUACCGGCUGCc- -3'
miRNA:   3'- -CGACUGCAg-----------CGCgaGUGGCCGAUGug -5'
18386 5' -56.7 NC_004681.1 + 24770 0.72 0.391138
Target:  5'- cGCa-GCGcaUCGCGCUCGCUGGCgcCACg -3'
miRNA:   3'- -CGacUGC--AGCGCGAGUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 33364 0.72 0.391138
Target:  5'- gGCUGagaccggccGCGUCGCGCgCGCCGuGUgGCACc -3'
miRNA:   3'- -CGAC---------UGCAGCGCGaGUGGC-CGaUGUG- -5'
18386 5' -56.7 NC_004681.1 + 48640 0.73 0.333074
Target:  5'- uGCUGcCGUCGCGCUCgACCgugaaguauuGGCagUGCGCc -3'
miRNA:   3'- -CGACuGCAGCGCGAG-UGG----------CCG--AUGUG- -5'
18386 5' -56.7 NC_004681.1 + 12974 1.05 0.002015
Target:  5'- cCUGACGUCGCGCUCACCGGCUACACc -3'
miRNA:   3'- cGACUGCAGCGCGAGUGGCCGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.