miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18387 3' -62.6 NC_004681.1 + 26210 0.67 0.347385
Target:  5'- -aAACGuCCUGgCCCGCcacggcggcgaUGCCCGCCc- -3'
miRNA:   3'- aaUUGU-GGGCgGGGCG-----------ACGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 33045 0.67 0.347385
Target:  5'- -aAGCACCCGCCgCCGaugaaGUCCuucagcgauGCCGCa -3'
miRNA:   3'- aaUUGUGGGCGG-GGCga---CGGG---------CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 40487 0.67 0.339541
Target:  5'- -aGACACCgGCCaCGCUGgCggUGCCGCu -3'
miRNA:   3'- aaUUGUGGgCGGgGCGACgG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 46410 0.67 0.338763
Target:  5'- ----uGCCUGgCCCacgaugcaggaugGCUGCCCGCCGu -3'
miRNA:   3'- aauugUGGGCgGGG-------------CGACGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 55891 0.67 0.334896
Target:  5'- --cGCGCCgaagaacaagaacuaCGCCgCGCaggucgugcgcgUGCCCGCCACc -3'
miRNA:   3'- aauUGUGG---------------GCGGgGCG------------ACGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 28253 0.67 0.331826
Target:  5'- ----uGCCgGUgCCGCUG-CCGCCGCu -3'
miRNA:   3'- aauugUGGgCGgGGCGACgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 45068 0.67 0.324241
Target:  5'- -aAGCAUCCGCCgCGgucgagGCCCucGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGGgGCga----CGGG--CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 16032 0.67 0.316785
Target:  5'- cUGGCAagggCGCCgCCGCUGUcaccgcauCCGCCGCa -3'
miRNA:   3'- aAUUGUgg--GCGG-GGCGACG--------GGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 3283 0.67 0.316047
Target:  5'- ---cCACCCucaaggaGUCCCGC-GCCCGCCu- -3'
miRNA:   3'- aauuGUGGG-------CGGGGCGaCGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 28231 0.68 0.302264
Target:  5'- -cGAUcCgCCGCCgCCGUUGCCCGCgGg -3'
miRNA:   3'- aaUUGuG-GGCGG-GGCGACGGGCGgUg -5'
18387 3' -62.6 NC_004681.1 + 41947 0.68 0.302264
Target:  5'- -gGACAggUCgGCUCCGCggagaucgGCCCGCUGCa -3'
miRNA:   3'- aaUUGU--GGgCGGGGCGa-------CGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 9894 0.68 0.302264
Target:  5'- gUGACAUUCGCCCagcaGCUGgCCGaCGCc -3'
miRNA:   3'- aAUUGUGGGCGGGg---CGACgGGCgGUG- -5'
18387 3' -62.6 NC_004681.1 + 61033 0.68 0.295198
Target:  5'- --cACGCCUccacugugGUUCCGCUGCCCGCgAa -3'
miRNA:   3'- aauUGUGGG--------CGGGGCGACGGGCGgUg -5'
18387 3' -62.6 NC_004681.1 + 23355 0.68 0.288261
Target:  5'- -aGGCGCCCGagguggucaaCCUC-CUGCCCGCCu- -3'
miRNA:   3'- aaUUGUGGGC----------GGGGcGACGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 10646 0.68 0.281453
Target:  5'- cUGACcgcuGCCUGgcgcCCCCGgUGCCCGCgGCc -3'
miRNA:   3'- aAUUG----UGGGC----GGGGCgACGGGCGgUG- -5'
18387 3' -62.6 NC_004681.1 + 7865 0.69 0.268221
Target:  5'- cUGACgaagaGCCCGCgCCCGUcgaUGagaCCGCCGCc -3'
miRNA:   3'- aAUUG-----UGGGCG-GGGCG---ACg--GGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 5193 0.69 0.261795
Target:  5'- --cGCGCCCGCCauggccgaGCUG-UCGCCACa -3'
miRNA:   3'- aauUGUGGGCGGgg------CGACgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 64904 0.69 0.261795
Target:  5'- cUGGCAUCUcUCCCGCggcGCCCGCCu- -3'
miRNA:   3'- aAUUGUGGGcGGGGCGa--CGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 24663 0.69 0.255495
Target:  5'- -cGACaACCCGCCCgaGCUGaUCGCCAa -3'
miRNA:   3'- aaUUG-UGGGCGGGg-CGACgGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 39835 0.69 0.255495
Target:  5'- --cGCACCgCGCgCaCCGC-GCCCGCgCGCg -3'
miRNA:   3'- aauUGUGG-GCG-G-GGCGaCGGGCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.