miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18388 5' -62.1 NC_004681.1 + 17942 0.66 0.480864
Target:  5'- -gCCG-GGGCGCCCggGUUGgugaGGCC-GGu -3'
miRNA:   3'- caGGCuCCCGCGGGa-CAGC----UCGGaCC- -5'
18388 5' -62.1 NC_004681.1 + 22788 0.66 0.480864
Target:  5'- -aCCaGGGGGCGCCaCUccuugggcugGUCGGuGCCgGGg -3'
miRNA:   3'- caGG-CUCCCGCGG-GA----------CAGCU-CGGaCC- -5'
18388 5' -62.1 NC_004681.1 + 14824 0.66 0.471423
Target:  5'- -aCCGAGGGCGU------GGGCCUGGa -3'
miRNA:   3'- caGGCUCCCGCGggacagCUCGGACC- -5'
18388 5' -62.1 NC_004681.1 + 64821 0.66 0.452829
Target:  5'- cUCCGAGGGCaCCCcGU-GGGaCUGGu -3'
miRNA:   3'- cAGGCUCCCGcGGGaCAgCUCgGACC- -5'
18388 5' -62.1 NC_004681.1 + 34685 0.67 0.425708
Target:  5'- uGUUCGGGGucucgcuucgGCGCCUucgGUgCGGGCUUGGg -3'
miRNA:   3'- -CAGGCUCC----------CGCGGGa--CA-GCUCGGACC- -5'
18388 5' -62.1 NC_004681.1 + 44472 0.67 0.416885
Target:  5'- -cCCGGacGGGCGCCCguaggGUCaGGUCUcGGg -3'
miRNA:   3'- caGGCU--CCCGCGGGa----CAGcUCGGA-CC- -5'
18388 5' -62.1 NC_004681.1 + 58718 0.67 0.408175
Target:  5'- -cUUGAGGG-GCCgaGUCGAGCCg-- -3'
miRNA:   3'- caGGCUCCCgCGGgaCAGCUCGGacc -5'
18388 5' -62.1 NC_004681.1 + 50322 0.67 0.408175
Target:  5'- -gCCGAGGGCGCCau-UgGAG-CUGGc -3'
miRNA:   3'- caGGCUCCCGCGGgacAgCUCgGACC- -5'
18388 5' -62.1 NC_004681.1 + 27698 0.67 0.381908
Target:  5'- -aCCGAGGGUgacccagGCgCCUGUgGuGCCUGc -3'
miRNA:   3'- caGGCUCCCG-------CG-GGACAgCuCGGACc -5'
18388 5' -62.1 NC_004681.1 + 685 0.68 0.366376
Target:  5'- -gUCGAuGGCGCCCUGaaGGaacucGCCUGGg -3'
miRNA:   3'- caGGCUcCCGCGGGACagCU-----CGGACC- -5'
18388 5' -62.1 NC_004681.1 + 3391 0.68 0.350502
Target:  5'- aGUCUGAGaaguuggccgcGGCGCCCgcgCGAGCCa-- -3'
miRNA:   3'- -CAGGCUC-----------CCGCGGGacaGCUCGGacc -5'
18388 5' -62.1 NC_004681.1 + 13386 0.7 0.253315
Target:  5'- -cUCGAcaGGGCGCCCUcggacUCGAugGCCUGGa -3'
miRNA:   3'- caGGCU--CCCGCGGGAc----AGCU--CGGACC- -5'
18388 5' -62.1 NC_004681.1 + 1278 0.74 0.15403
Target:  5'- uGUCgGAGGGCGCCCaGga-AGUCUGGg -3'
miRNA:   3'- -CAGgCUCCCGCGGGaCagcUCGGACC- -5'
18388 5' -62.1 NC_004681.1 + 43631 0.74 0.150131
Target:  5'- -cCCGAGGGaCGCUgaGUCGAcCCUGGc -3'
miRNA:   3'- caGGCUCCC-GCGGgaCAGCUcGGACC- -5'
18388 5' -62.1 NC_004681.1 + 39345 0.76 0.101549
Target:  5'- cUCCGAGGG-GCCgCUGUgGAucgGCCUGGg -3'
miRNA:   3'- cAGGCUCCCgCGG-GACAgCU---CGGACC- -5'
18388 5' -62.1 NC_004681.1 + 13290 1.1 0.000325
Target:  5'- aGUCCGAGGGCGCCCUGUCGAGCCUGGa -3'
miRNA:   3'- -CAGGCUCCCGCGGGACAGCUCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.