Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18388 | 5' | -62.1 | NC_004681.1 | + | 17942 | 0.66 | 0.480864 |
Target: 5'- -gCCG-GGGCGCCCggGUUGgugaGGCC-GGu -3' miRNA: 3'- caGGCuCCCGCGGGa-CAGC----UCGGaCC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 22788 | 0.66 | 0.480864 |
Target: 5'- -aCCaGGGGGCGCCaCUccuugggcugGUCGGuGCCgGGg -3' miRNA: 3'- caGG-CUCCCGCGG-GA----------CAGCU-CGGaCC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 14824 | 0.66 | 0.471423 |
Target: 5'- -aCCGAGGGCGU------GGGCCUGGa -3' miRNA: 3'- caGGCUCCCGCGggacagCUCGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 64821 | 0.66 | 0.452829 |
Target: 5'- cUCCGAGGGCaCCCcGU-GGGaCUGGu -3' miRNA: 3'- cAGGCUCCCGcGGGaCAgCUCgGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 50322 | 0.67 | 0.408175 |
Target: 5'- -gCCGAGGGCGCCau-UgGAG-CUGGc -3' miRNA: 3'- caGGCUCCCGCGGgacAgCUCgGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 34685 | 0.67 | 0.425708 |
Target: 5'- uGUUCGGGGucucgcuucgGCGCCUucgGUgCGGGCUUGGg -3' miRNA: 3'- -CAGGCUCC----------CGCGGGa--CA-GCUCGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 58718 | 0.67 | 0.408175 |
Target: 5'- -cUUGAGGG-GCCgaGUCGAGCCg-- -3' miRNA: 3'- caGGCUCCCgCGGgaCAGCUCGGacc -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 44472 | 0.67 | 0.416885 |
Target: 5'- -cCCGGacGGGCGCCCguaggGUCaGGUCUcGGg -3' miRNA: 3'- caGGCU--CCCGCGGGa----CAGcUCGGA-CC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 27698 | 0.67 | 0.381908 |
Target: 5'- -aCCGAGGGUgacccagGCgCCUGUgGuGCCUGc -3' miRNA: 3'- caGGCUCCCG-------CG-GGACAgCuCGGACc -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 3391 | 0.68 | 0.350502 |
Target: 5'- aGUCUGAGaaguuggccgcGGCGCCCgcgCGAGCCa-- -3' miRNA: 3'- -CAGGCUC-----------CCGCGGGacaGCUCGGacc -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 685 | 0.68 | 0.366376 |
Target: 5'- -gUCGAuGGCGCCCUGaaGGaacucGCCUGGg -3' miRNA: 3'- caGGCUcCCGCGGGACagCU-----CGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 13386 | 0.7 | 0.253315 |
Target: 5'- -cUCGAcaGGGCGCCCUcggacUCGAugGCCUGGa -3' miRNA: 3'- caGGCU--CCCGCGGGAc----AGCU--CGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 1278 | 0.74 | 0.15403 |
Target: 5'- uGUCgGAGGGCGCCCaGga-AGUCUGGg -3' miRNA: 3'- -CAGgCUCCCGCGGGaCagcUCGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 43631 | 0.74 | 0.150131 |
Target: 5'- -cCCGAGGGaCGCUgaGUCGAcCCUGGc -3' miRNA: 3'- caGGCUCCC-GCGGgaCAGCUcGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 39345 | 0.76 | 0.101549 |
Target: 5'- cUCCGAGGG-GCCgCUGUgGAucgGCCUGGg -3' miRNA: 3'- cAGGCUCCCgCGG-GACAgCU---CGGACC- -5' |
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18388 | 5' | -62.1 | NC_004681.1 | + | 13290 | 1.1 | 0.000325 |
Target: 5'- aGUCCGAGGGCGCCCUGUCGAGCCUGGa -3' miRNA: 3'- -CAGGCUCCCGCGGGACAGCUCGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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